Browse Element(s) Details


Os.42812.1.A1_at

Description gb:CR285687
DB_XREF= gi:44672253
DB_XREF=CR285687
CLONE=p873e11p5
TID=Os.42812.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) disease resistance response protein-like (B1056G08.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4252011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed
LOC_Os07g42510Os.10293.1.S1_at11/117+25439123..25441000AP2 domain containing protein, expressed
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein
LOC_Os07g42560NANA7+25464356..25466031hypothetical protein
LOC_Os07g42570OsAffx.28874.1.S1_x_at11/117+25467856..25468425Dirigent-like protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42812.1.A1_at--164--6731Chr07:25445049..25445073 (25 bp)
GTTCAACACGACGTTCGGGCAGGTG
LOC_Os07g42520
Os.42812.1.A1_at--841--6151Chr07:25445133..25445157 (25 bp)
GAGGTACCAGGGATTCATCGTCGGC
LOC_Os07g42520
Os.42812.1.A1_at--1021--9971Chr07:25445137..25445161 (25 bp)
TACCAGGGATTCATCGTCGGCACGG
LOC_Os07g42520
Os.42812.1.A1_at--387--7691Chr07:25445176..25445200 (25 bp)
GGGTACCTGACGTCGGCCACCGTCG
LOC_Os07g42520
Os.42812.1.A1_at--633--4131Chr07:25445231..25445255 (25 bp)
CGCTGTCGCTGGAGGGCCCCTTCTT
LOC_Os07g42520
Os.42812.1.A1_at--423--8471Chr07:25445312..25445336 (25 bp)
TGGCGCGAGGGTACTACCTCCTCAA
LOC_Os07g42520
Os.42812.1.A1_at--213--1291Chr07:25445375..25445399 (25 bp)
AGATCGACTTCTTCGTCCTCATGTA
LOC_Os07g42520
Os.42812.1.A1_at--690--751Chr07:25445395..25445419 (25 bp)
ATGTACAGCTCCACCCACTAGCTAT
LOC_Os07g42520
Os.42812.1.A1_at--978--10151Chr07:25445421..25445445 (25 bp)
TATAAGCAAGAAGCGTGTAAACACT
LOC_Os07g42520
Os.42812.1.A1_at--444--1111Chr07:25445446..25445470 (25 bp)
AGTGTAACACTGTACCAGCGAGGCA
LOC_Os07g42520
Os.42812.1.A1_at--620--1951Chr07:25445454..25445478 (25 bp)
ACTGTACCAGCGAGGCACCGTTCTT
LOC_Os07g42520
Target Sequence 
GTTCAACACGACGTTCGGGCAGGTGGCCGTGTTCGACAACGAGCTCCGCNCCGGCGAGGACAGGGCNGCGTCGCCGCTGG
TGGGGAGGTACCAGGGATTCATCGTCGGCACGGGGCGGAGCTCGCCGGGGTACCTGACGTCGGCCACCGTCGCGTTCACC
GCCGGCGAGCTCAACGGGAGCACGCTGTCGCTGGAGGGCCCCTTCTTCGGCTTCGCCGGCACGGCGGAGCGCAGCATCGT
GGGCGGCACCGGCAAGCTGAGGCTGGCGCGAGGGTACTACCTCCTCAAGCTCATCGGCAAGACCTCGCCGGAGACGGCCG
TCTCCGAGATCGACTTCTTCGTCCTCATGTACAGCTCCACCCACTAGCTATGTATAAGCAAGAAGCGTGTAAACACTAGT
GTAACACTGTACCAGCGAGGCACCGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42812.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis