Browse Element(s) Details


Os.10293.1.S1_at

Description gb:AK109360.2
DB_XREF= gi:42821677
TID=Os.10293.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EREBP(Ethylene-responsive element-binding protein)-like protein~contains ESTs AU173302(R2073),D24504(R2073) (B1056G08.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B03, full insert sequence.
FL= gb:AK061047.1 gb:AK109360.2 gb:AK067060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4251011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed
LOC_Os07g42510Os.10293.1.S1_at11/117+25439123..25441000AP2 domain containing protein, expressed
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein
LOC_Os07g42560NANA7+25464356..25466031hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10293.1.S1_at--566--10631Chr07:25439648..25439672 (25 bp)
TTCGAGCTGAACGATCTTGACGGAT
LOC_Os07g42510
Os.10293.1.S1_at--204--8151Chr07:25439613..25439637 (25 bp)
GGACAACGCATTCGATCACCAGATT
LOC_Os07g42510
Os.10293.1.S1_at--822--4691Chr07:25439576..25439600 (25 bp)
GCGGCTGTCGCTGATGAATTCGCGT
LOC_Os07g42510
Os.10293.1.S1_at--191--5211Chr07:25439561..25439585 (25 bp)
GAATTCGCGTTCTACGACGATCCGA
LOC_Os07g42510
Os.10293.1.S1_at--1018--6371Chr07:25439543..25439567 (25 bp)
GATCCGAGCTACATGCAGCTGGGTT
LOC_Os07g42510
Os.10293.1.S1_at--879--3891Chr07:25439525..25439549 (25 bp)
CTGGGTTACCAGCTCGATCAGGGCA
LOC_Os07g42510
Os.10293.1.S1_at--400--891Chr07:25439464..25439488 (25 bp)
AGGCCGTCAACATTGGTGGACTCTG
LOC_Os07g42510
Os.10293.1.S1_at--740--9591Chr07:25439229..25439253 (25 bp)
TCATCAGGGATTTGTTCAGGCTTTT
LOC_Os07g42510
Os.10293.1.S1_at--218--5571Chr07:25439180..25439204 (25 bp)
GAAAGATTGCGTTTTTTGTTGTCAT
LOC_Os07g42510
Os.10293.1.S1_at--1005--8811Chr07:25439164..25439188 (25 bp)
TGTTGTCATGTTGGGTACTCTACTC
LOC_Os07g42510
Os.10293.1.S1_at--587--9891Chr07:25439149..25439173 (25 bp)
TACTCTACTCTTCTGTTCCTAAAGT
LOC_Os07g42510
Target Sequence 
TTCGAGCTGAACGATCTTGACGGATCAAGATGCAAGGACAACGCATTCGATCACCAGATTCACAAGGTAGAAGCGGCTGT
CGCTGATGAATTCGCGTTCTACGACGATCCGAGCTACATGCAGCTGGGTTACCAGCTCGATCAGGGCAACTCGTACGAGA
ACATCGACGCGCTCTTCGGCGGCGAGGCCGTCAACATTGGTGGACTCTGGAGCTTCGACGACATGCCAATGGAGTTCAGA
GCTTATTGAGCATTTGATTCTATTTAGGAGGGAGTGAATTATTTGGGAGGAAGAATCGATGTTGTAACTTGTAAAATCTC
TGATGATGATCTCTGCATCATATGATCAATTTGAGTGCAGTTTTGTTTTTGTAAATACGAATTCTTTATTATGATGTTAG
GTTCTTAATTTNCCCTTCTTCATCAGGGATTTGTTCAGGCTTTTGTTGTGATGACTGATTGGACGAGGGAAAGATTGCGT
TTTTTGTTGTCATGTTGGGTACTCTACTCTTCTGTTCCTAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis