Browse Element(s) Details


Os.8759.1.S1_at

Description gb:AK071047.1
DB_XREF= gi:32981070
TID=Os.8759.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU062478(C11349),AU092192(C11349),AU076219(R10022)~similar to senescence-associated putative protein (B1056G08.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077A06, full insert sequence.
FL= gb:AK071047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4250010/11Senescence-associated, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed
LOC_Os07g42510Os.10293.1.S1_at11/117+25439123..25441000AP2 domain containing protein, expressed
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8759.1.S1_at--926--8491Chr07:25436697..25436721 (25 bp)
TGGCAGGGCCTTTGAAGCAGATGTT
LOC_Os07g42500
Os.8759.1.S1_at--203--5531Chr07:25436731..25436755 (25 bp)
GAAAAAGGTTCTGGGCTCTGCTACA
LOC_Os07g42500
Os.8759.1.S1_at--793--10471NONE
TTACAGCTGTAGCAAAGGTGCCTTT
NONE
Os.8759.1.S1_at--207--6431Chr07:25437513..25437537 (25 bp)
GATCAGAGACCAATCTACGCTTCTA
LOC_Os07g42500
Os.8759.1.S1_at--470--451Chr07:25437525..25437549 (25 bp)
ATCTACGCTTCTATGGCGATGCTTA
LOC_Os07g42500
Os.8759.1.S1_at--314--4631Chr07:25437540..25437564 (25 bp)
GCGATGCTTACTTGACCACAACTGA
LOC_Os07g42500
Os.8759.1.S1_at--772--5311Chr07:25437577..25437601 (25 bp)
GAAGGTGGAGAAACCCAGAGCCGCC
LOC_Os07g42500
Os.8759.1.S1_at--946--4171Chr07:25437606..25437630 (25 bp)
CCCTGTACTCAGCTCTAGATGATCT
LOC_Os07g42500
Os.8759.1.S1_at--432--7871Chr07:25437795..25437819 (25 bp)
GGTTAAAATCCCTTGCACGACTTAT
LOC_Os07g42500
Os.8759.1.S1_at--957--7411Chr07:25437893..25437917 (25 bp)
GTGTTCCACTGATAATCTCTCGGTA
LOC_Os07g42500
Os.8759.1.S1_at--138--6471Chr07:25437903..25437927 (25 bp)
GATAATCTCTCGGTACACATGTAAA
LOC_Os07g42500
Target Sequence 
TGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTTACAGCTGTAGCAAAGGTG
CCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACNAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTAC
TTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCCAGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCT
ATTCTCTAAAATGGTTTACTAGTTCTNNNACGTGTTCATGCCAAAAAAAAAAANNAAAAAAANAAAAGGAAAAGCTNTCC
ATTACTCATTGATGTACNCAATATGTATATAAANANAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTNGGATGGGT
CGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACC
CAAATNTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis