Browse Element(s) Details


OsAffx.16684.1.S1_at

Description tigr:9635.m04251
TID=OsAffx.16684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FMN-dependent dehydrogenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4244010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008891molecular_functionglycolate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16684.1.S1_at--707--3371Chr07:25411705..25411729 (25 bp)
CAGCCTCCCGTCAGGAATCGTGTAG
LOC_Os07g42440
OsAffx.16684.1.S1_at--751--3051Chr07:25411720..25411744 (25 bp)
AATCGTGTAGCGTGTTTGGCAAGAA
LOC_Os07g42440
OsAffx.16684.1.S1_at--551--5931Chr07:25411756..25411780 (25 bp)
GAGCATAGCATTGATCTGACAGTGA
LOC_Os07g42440
OsAffx.16684.1.S1_at--847--2371Chr07:25411802..25411826 (25 bp)
AAACCCCATCAATTTGTTGTTGCAA
LOC_Os07g42440
OsAffx.16684.1.S1_at--320--2411Chr07:25411825..25411849 (25 bp)
AAACACATACACTTTGTTCGCAAAG
LOC_Os07g42440
OsAffx.16684.1.S1_at--847--10631Chr07:25411909..25411933 (25 bp)
TTCGCAGTCCCAGCATTGTCAAGAA
LOC_Os07g42440
OsAffx.16684.1.S1_at--376--10731Chr07:25411947..25411971 (25 bp)
TTGCATCTAAATAACTCAGTACTGT
LOC_Os07g42440
OsAffx.16684.1.S1_at--24--10491Chr07:25411989..25412013 (25 bp)
TTAAATAGTGTCTACCAGCTGCTCC
LOC_Os07g42440
OsAffx.16684.1.S1_at--650--3751Chr07:25412024..25412048 (25 bp)
CTCAGCCTCTGACCCATGAACTGGA
LOC_Os07g42440
OsAffx.16684.1.S1_at--881--1951Chr07:25412043..25412067 (25 bp)
ACTGGATCAGTTACTCTTTCACTCA
LOC_Os07g42440
OsAffx.16684.1.S1_at--1042--3871Chr07:25412097..25412121 (25 bp)
CTGGGACTGGTGCACTGCCTTGTTC
NONE
Target Sequence 
CAGCCTCCCGTCAGGAATCGTGTAGCGTGTTTGGCAAGAATACAGTGAAAAGAGCATAGCATTGATCTGACAGTGAACAA
TAAGAACTATGAGGAGAAAACCCCATCAATTTGTTGTTGCAAACACATACACTTTGTTCGCAAAGCAGAATTGCTCTTGA
AATAAAGCTATCCATGAGATTGTAACAAAAAAAAGGCTGGCTAGTTCGCAGTCCCAGCATTGTCAAGAACACAAAATTTG
ATTTGCATCTAAATAACTCAGTACTGTAAAAAGATTAAAGCTACTTAAATAGTGTCTACCAGCTGCTCCCGACAACAAAC
TCAGCCTCTGACCCATGAACTGGATCAGTTACTCTTTCACTCACTCCCCCCAGTTAGGGGTGGGTGCTGCCGCTGGGACT
GGTGCACTGCCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis