Browse Element(s) Details


Os.42814.1.S1_x_at

Description gb:CB967248
DB_XREF= gi:30229357
DB_XREF=NL50_B05
CLONE=NL50_B05
TID=Os.42814.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.42814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative (S)-2-hydroxy-acid oxidase (B1056G08.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4244011/11expressed protein
LOC_Os04g532101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008891molecular_functionglycolate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42814.1.S1_x_at--635--531Chr07:25410708..25410732 (25 bp)
ATCGCCGCCCTGGAAGAGGTGGTCA
LOC_Os07g42440
Os.42814.1.S1_x_at--1123--3031Chr07:25410773..25410797 (25 bp)
AATCCGGCGAGGCACTGACGTGTTC
LOC_Os07g42440
Os.42814.1.S1_x_at--971--8932Chr07:25410788..25410812 (25 bp)
TGACGTGTTCAAGGCCCTGGCGCTC
LOC_Os07g42440
Os.42814.1.S1_x_at--246--4631Chr07:25411007..25411031 (25 bp)
GCGAGGCACGTGATCGAGATGCTCA
LOC_Os07g42440
Os.42814.1.S1_x_at--217--6051Chr07:25411082..25411106 (25 bp)
GAGATCACCCGCAGCCATGTCATGA
LOC_Os07g42440
Os.42814.1.S1_x_at--298--1031Chr07:25411124..25411148 (25 bp)
AGGTCCCTGCTCTGATGAATCATTT
LOC_Os07g42440
Os.42814.1.S1_x_at--365--5251Chr07:25411140..25411164 (25 bp)
GAATCATTTCTCATCTGGCCAATGC
LOC_Os07g42440
Os.42814.1.S1_x_at--257--8451Chr07:25411155..25411179 (25 bp)
TGGCCAATGCAGCTTCAGGTCTAAA
LOC_Os07g42440
Os.42814.1.S1_x_at--1148--4831Chr07:25411191..25411215 (25 bp)
GCTATGGGCCAACCCGTAAACCGAT
LOC_Os07g42440
Os.42814.1.S1_x_at--793--331Chr07:25411299..25411323 (25 bp)
ATAACTATAAGTGGCTTCGCGGATC
LOC_Os07g42440
Os.42814.1.S1_x_at--792--4911Chr07:25411312..25411336 (25 bp)
GCTTCGCGGATCAGTCCAGTTACAT
LOC_Os07g42440
Target Sequence 
ATCGCCGCCCTGGAAGAGGTGGTCAGGGCGGTGGCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCAC
TGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGG
GGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGC
GTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCT
GGCCAATGCAGCTTCAGGTCTAAAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTG
ACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCNAGGCCTACTTATTTGGTCTATAACTATAAGTGGCT
TCGCGGATCAGTCCAGTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42814.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis