Browse Element(s) Details


Os.8273.1.S1_s_at

Description gb:AK102735.1
DB_XREF= gi:32987944
TID=Os.8273.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 40S ribosomal protein (B1056G08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106C12, full insert sequence.
FL= gb:AK105968.1 gb:AK058308.1 gb:AK103952.1 gb:AK102735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4245011/1140S ribosomal protein SA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0042256biological_processmature ribosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8273.1.S1_s_at--681--3811Chr07:25412147..25412171 (25 bp)
CTCCTGCAGCCGGAGGATGGGACAC
LOC_Os07g42450
Os.8273.1.S1_s_at--457--9171Chr07:25412116..25412140 (25 bp)
TGCCCCTGCCCCTGGATGGGAACAA
LOC_Os07g42450
Os.8273.1.S1_s_at--1086--8151Chr07:25412098..25412122 (25 bp)
GGAACAAGGCAGTGCACCAGTCCCA
LOC_Os07g42450
Os.8273.1.S1_s_at--726--2931Chr07:25412093..25412117 (25 bp)
AAGGCAGTGCACCAGTCCCAGCGGC
LOC_Os07g42450
Os.8273.1.S1_s_at--969--6851Chr07:25412000..25412024 (25 bp)
GTTTGTTGTCGGGAGCAGCTGGTAG
LOC_Os07g42450
Os.8273.1.S1_s_at--969--4871Chr07:25411961..25411985 (25 bp)
GCTTTAATCTTTTTACAGTACTGAG
LOC_Os07g42450
Os.8273.1.S1_s_at--795--6731Chr07:25411910..25411934 (25 bp)
GTTCTTGACAATGCTGGGACTGCGA
LOC_Os07g42450
Os.8273.1.S1_s_at--299--7631Chr07:25411895..25411919 (25 bp)
GGGACTGCGAACTAGCCAGCCTTTT
LOC_Os07g42450
Os.8273.1.S1_s_at--525--9991Chr07:25411883..25411907 (25 bp)
TAGCCAGCCTTTTTTTTGTTACAAT
LOC_Os07g42450
Os.8273.1.S1_s_at--8--10411Chr07:25411870..25411894 (25 bp)
TTTTGTTACAATCTCATGGATAGCT
LOC_Os07g42450
Os.8273.1.S1_s_at--528--8871Chr07:25411788..25411812 (25 bp)
TGATGGGGTTTTCTCCTCATAGTTC
LOC_Os07g42450
Target Sequence 
CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGAACAAGGCAGTGCACCAGTCCCAGCGGCA
GCACCCACCCCTAACTGGGGGGAGTGAGTGAAAGAGTAACTGATCCAGTTCATGGGTCAGAGGCTGAGTTTGTTGTCGGG
AGCAGCTGGTAGACACTATTTAAGTAGCTTTAATCTTTTTACAGTACTGAGTTATTTAGATGCAAATCAAATTTTGTGTT
CTTGACAATGCTGGGACTGCGAACTAGCCAGCCTTTTTTTTGTTACAATCTCATGGATAGCTTTATTTCAAGAGCAATTC
TGCTTTGCGAACAAAGTGTATGTGTTTGCAACAACAAATTGATGGGGTTTTCTCCTCATAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8273.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis