Browse Element(s) Details


Os.9884.1.S1_at

Description gb:AU089812
DB_XREF= gi:7652154
DB_XREF=AU089812
CLONE=S16433
TID=Os.9884.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D49253(S16433),AU089812(S16433)~unknown protein (B1056G08.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4243011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9884.1.S1_at--204--9251Chr07:25402619..25402643 (25 bp)
TCCTTCATCTCCTGAATCTCTAGAG
LOC_Os07g42430
Os.9884.1.S1_at--433--8151Chr07:25403681..25403705 (25 bp)
GGACAATCTACCACTCAATATCTAT
LOC_Os07g42430
Os.9884.1.S1_at--695--431Chr07:25403700..25403724 (25 bp)
ATCTATGAGCATCACGAAATCGCCA
LOC_Os07g42430
Os.9884.1.S1_at--527--2251Chr07:25403716..25403740 (25 bp)
AAATCGCCAAGAAAGCACTGCCAAA
LOC_Os07g42430
Os.9884.1.S1_at--952--6291Chr07:25403775..25403799 (25 bp)
GATGAGCACACCCTAAGAACTTGTT
LOC_Os07g42430
Os.9884.1.S1_at--1071--5472Chr07:25403791..25403815 (25 bp)
GAACTTGTTCGATTAATCCTACCAA
LOC_Os07g42430
Os.9884.1.S1_at--412--8551Chr07:25403835..25403859 (25 bp)
TGGAGGAGAATTCCCTCCTTCATGG
LOC_Os07g42430
Os.9884.1.S1_at--699--1451Chr07:25403885..25404023 (25 bp)
AGAATAAGTTTATGACCTCACGTTC
LOC_Os07g42430
Os.9884.1.S1_at--633--10031Chr07:25404042..25404066 (25 bp)
TAGACATGTCAACAATCTTACTGGG
LOC_Os07g42430
Os.9884.1.S1_at--1087--2471Chr07:25404071..25404095 (25 bp)
AACATGCCTTCACCCATAATTGTCG
LOC_Os07g42430
Os.9884.1.S1_at--1093--4311Chr07:25404084..25404108 (25 bp)
CCATAATTGTCGCTCCAATGTGGAG
LOC_Os07g42430
Target Sequence 
TCCTTCATCTCCTGAATCTCTAGAGAAATGGAGGACAATCTACCACTCAATATCTATGAGCATCACGAAATCGCCAAGAA
AGCACTGCCAAAGGTGATTTACGATTACATCAATAGTGGAGCAGAGGATGAGCACACCCTAAGAACTTGTTCGATTAATC
CTACCAAGAAGGGGATTGAGGGGGATTGGAGGAGAATTCCCTCCTTCATGGGGATGAAACGAACAAGGCCTGAGGGAGAA
TATTGCATTATATGGAAGAATAAGTTTATGACCTCACGTTCTTGTGGATGTCAGCAAGGTAGACATGTCAACAATCTTAC
TGGGNATACAACATGCCTTCACCCATAATTGTCGCTCCAATGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis