Browse Element(s) Details


Os.8273.1.S1_at

Description gb:AK102735.1
DB_XREF= gi:32987944
TID=Os.8273.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 40S ribosomal protein (B1056G08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106C12, full insert sequence.
FL= gb:AK105968.1 gb:AK058308.1 gb:AK103952.1 gb:AK102735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4245011/1140S ribosomal protein SA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0042256biological_processmature ribosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8273.1.S1_at--864--8351Chr07:25412463..25412487 (25 bp)
GGCGGCTCTGGTGGCTCCTGATTAT
LOC_Os07g42450
Os.8273.1.S1_at--1029--3771Chr07:25412458..25412482 (25 bp)
CTCTGGTGGCTCCTGATTATGGTGC
LOC_Os07g42450
Os.8273.1.S1_at--610--8471Chr07:25412452..25412476 (25 bp)
TGGCTCCTGATTATGGTGCGGTTGC
LOC_Os07g42450
Os.8273.1.S1_at--638--4271Chr07:25412447..25412471 (25 bp)
CCTGATTATGGTGCGGTTGCGGAAT
LOC_Os07g42450
Os.8273.1.S1_at--251--151Chr07:25412443..25412467 (25 bp)
ATTATGGTGCGGTTGCGGAATATGC
LOC_Os07g42450
Os.8273.1.S1_at--739--10691Chr07:25412431..25412455 (25 bp)
TTGCGGAATATGCTGCCCCAGCGGC
LOC_Os07g42450
Os.8273.1.S1_at--438--3111Chr07:25412425..25412449 (25 bp)
AATATGCTGCCCCAGCGGCTGATAC
LOC_Os07g42450
Os.8273.1.S1_at--899--2971Chr07:25412389..25412413 (25 bp)
AATGGGGCACTGACGCTGCAGCTCA
LOC_Os07g42450
Os.8273.1.S1_at--261--9111Chr07:25412361..25412385 (25 bp)
TGCTGCCATTCCAGCACAGGCTGGT
LOC_Os07g42450
Os.8273.1.S1_at--365--9231Chr07:25412024..25412048 (25 bp)
TCCAGTTCATGGGTCAGAGGCTGAG
LOC_Os07g42450
Os.8273.1.S1_at--830--4591Chr07:25411821..25411845 (25 bp)
GCGAACAAAGTGTATGTGTTTGCAA
LOC_Os07g42450
Target Sequence 
GGCGGCTCTGGTGGCTCCTGATTATGGTGCGGTTGCGGAATATGCTGCCCCAGCGGCTGATACCTGGGGTGGAGAATGGG
GCACTGACGCTGCAGCTCAACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGCTCCTGCAGCC
GGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGAACAAGGCAGTGCACCAGTCCCAGCGGCAGCACCCACCCC
TAACTGGGGGGAGTGAGTGAAAGAGTAACTGATCCAGTTCATGGGTCAGAGGCTGAGTTTGTTGTCGGGAGCAGCTGGTA
GACACTATTTAAGTAGCTTTAATCTTTTTACAGTACTGAGTTATTTAGATGCAAATCAAATTTTGTGTTCTTGACAATGC
TGGGACTGCGAACTAGCCAGCCTTTTTTTTGTTACAATCTCATGGATAGCTTTATTTCAAGAGCAATTCTGCTTTGCGAA
CAAAGTGTATGTGTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis