Browse Element(s) Details


Os.5194.1.S1_x_at

Description gb:AK119636.1
DB_XREF= gi:37989259
TID=Os.5194.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full insert sequence.
FL= gb:AK119636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6611011/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66100Os.19823.1.S1_at11/111+38709242..38712353Gibberellin 20 oxidase 2, putative, expressed
LOC_Os01g66110Os.5194.2.S1_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66110Os.5194.1.S1_x_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66120Os.12199.1.S1_at10/111+38725728..38728330NAC-domain containing protein 2, putative, expressed
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5194.1.S1_x_at--902--5871Chr01:38714024..38714048 (25 bp)
GAGCGTGGCTTGTTTGGTATGTACC
LOC_Os01g66110
Os.5194.1.S1_x_at--908--5231Chr01:38713988..38714012 (25 bp)
GAATCTTTCAGCACTTACCCGAGAA
LOC_Os01g66110
Os.5194.1.S1_x_at--636--5491Chr01:38713966..38713990 (25 bp)
GAACATACGACCTTCTGCATGCAGA
LOC_Os01g66110
Os.5194.1.S1_x_at--133--3431Chr01:38713945..38713969 (25 bp)
CAGACCATCTCTTCTCAAAGCTAAA
LOC_Os01g66110
Os.5194.1.S1_x_at--110--2851Chr01:38713624..38713648 (25 bp)
AAGTCGCTTCAGTGGGAGGTTCGCA
LOC_Os01g66110
Os.5194.1.S1_x_at--549--6711Chr01:38713606..38713630 (25 bp)
GTTCGCATGACCTACACCAAGGGTA
LOC_Os01g66110
Os.5194.1.S1_x_at--568--2591Chr01:38713582..38713606 (25 bp)
AACGAGGGTCTTCTATGTGTCCAAA
LOC_Os01g66110
Os.5194.1.S1_x_at--635--3271Chr01:38713561..38713585 (25 bp)
CAAAAGTCCATGTGGCGGCCCAAGG
LOC_Os01g66110
Os.5194.1.S1_x_at--126--2291Chr01:38713368..38713392 (25 bp)
AAATGCACTCTATATTCTCTTCTTG
LOC_Os01g66110
Os.5194.1.S1_x_at--16--10211Chr01:38713358..38713382 (25 bp)
TATATTCTCTTCTTGCTGTGCTCTT
LOC_Os01g66110
Os.5194.1.S1_x_at--610--4791Chr01:38713333..38713357 (25 bp)
GCTCCATTGCTGTAAGGTTGTATTG
LOC_Os01g66110
Target Sequence 
GAGCGTGGCTTGTTTGGTATGTACCATGACTGGTGTGAATCTTTCAGCACTTACCCGAGAACATACGACCTTCTGCATGC
AGACCATCTCTTCTCAAAGCTAAAAAAGAGATGCAAATTGTTGCCGGTGTTTGCGGAGGTCGACAGAATATTGAGGCCAG
AAGGAAAGCTGATTGTGAGGGATAATGCAGAGACAATAAACGAACTGCAAGGCATGGTAAAGTCGCTTCAGTGGGAGGTT
CGCATGACCTACACCAAGGGTAACGAGGGTCTTCTATGTGTCCAAAAGTCCATGTGGCGGCCCAAGGAGATCGAGGCAAG
CATGTGAAATATACAGATGTTCAAGAGAACTGTTACTGGTTAGTGGTACATTAGACTGAATTTTGGCTCTAGATATGCAT
ACTATTCTTGTTGATTCTGAAAAGGCATAAGCCTTGATGTAATTGTAGAATCATTTTTTTTCTTTCTTGCCAAACAAATG
CACTCTATATTCTCTTCTTGCTGTGCTCTTGCTCCATTGCTGTAAGGTTGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5194.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis