Browse Element(s) Details


Os.51962.1.S1_at

Description gb:AK064417.1
DB_XREF= gi:32974435
TID=Os.51962.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B03, full insert sequence.
FL= gb:AK064417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g066109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06610Os.51962.1.S1_at9/1110+3408248..3416654expressed protein
LOC_Os10g06610Os.23458.1.A1_x_at1/1110+3408248..3416654expressed protein
LOC_Os10g06620OsAffx.18154.1.S1_at11/1110+3418414..3418668hypothetical protein
LOC_Os10g06630Os.15856.1.S1_at11/1110+3422622..3423545Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os10g06640NANA10+3430659..3435076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06650NANA10+3436782..3437165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.47463.1.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.14491.2.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51962.1.S1_at--19--931Chr10:3415858..3416018 (25 bp)
AGGCTATGGTTCATGCTTCTGAGAA
LOC_Os10g06610
Os.51962.1.S1_at--586--31Chr10:3416037..3416061 (25 bp)
ATTGGTCAGGTCACTTGCCCAAATT
LOC_Os10g06610
Os.51962.1.S1_at--393--9151Chr10:3416052..3416076 (25 bp)
TGCCCAAATTACCACTCTTCTTTAT
LOC_Os10g06610
Os.51962.1.S1_at--394--851NONE
ATGGCAGCTCACATATCATTGTCAA
NONE
Os.51962.1.S1_at--664--9731NONE
TCAATGTAGCTCCTGACTGGGTAGT
NONE
Os.51962.1.S1_at--549--5731Chr10:3416203..3416227 (25 bp)
GACTGGGTAGTGTGTAGCCGCCAAA
LOC_Os10g06610
Os.51962.1.S1_at--1081--10011Chr10:3416286..3416310 (25 bp)
TAGCAGAGGCTCTCGGCAAGGCAGC
LOC_Os10g06610
Os.51962.1.S1_at--834--8791Chr10:3416328..3416352 (25 bp)
TGTTCGTCAACTTCTGTGCTAACCT
LOC_Os10g06610
Os.51962.1.S1_at--1069--7311Chr10:3416343..3416367 (25 bp)
GTGCTAACCTATTCGCCAAGAGCGT
LOC_Os10g06610
Os.51962.1.S1_at--1107--8411Chr10:3416476..3416500 (25 bp)
GGCCGATGTGGCTACCATGTTTATT
LOC_Os10g06610
Os.51962.1.S1_at--551--10051Chr10:3416539..3416563 (25 bp)
TAGTTCCACAGCTATTACCATGGTT
LOC_Os10g06610
Target Sequence 
AGGCTATGGTTCATGCTTCTGAGAAGCATTCCAGTTTTAAACCATTGGTCAGGTCACTTGCCCAAATTACCACTCTTCTT
TATCCCGGGATTGTACAAAATAACAATCTCATGTAATTTTTGTAAATTGTGTAGCTATGATAATGAAATTTGTTGGTTAA
CTATCATAGATGGAATGGCAGCTCACATATCATTGTCAATGTAGCTCCTGACTGGGTAGTGTGTAGCCGCCAAAAAGAAA
CTGGGTAGCATGTGACTGTTCATGCATCTTAAACATCTGACGTGATAGCACATAGCAGAGGCTCTCGGCAAGGCAGCAAC
ACCAAGAACTCCACTGTTCGTCAACTTCTGTGCTAACCTATTCGCCAAGAGCGTAGTGCCAGGAATGGGCATTAGGAAGA
CTGGAAGTTCATCTTAGCTTTTTTTTTTTTTGTAGGTTTGATCTGTTTAGTTGCATCTTGCAGTTTACATCGAGTTGCAT
CAATGGCCGATGTGGCTACCATGTTTATTGAATACTCTACATGGTAGGTGCAAATGAGGACTGGAATTAGTTCCACAGCT
ATTACCATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis