Browse Element(s) Details


Os.15856.1.S1_at

Description gb:AK058898.1
DB_XREF= gi:32968916
TID=Os.15856.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cyclophilin (OSJNAa0034B05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H03, full insert sequence.
FL= gb:AK058898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0663011/11Peptidyl-prolyl cis-trans isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06610Os.51962.1.S1_at9/1110+3408248..3416654expressed protein
LOC_Os10g06610Os.23458.1.A1_x_at1/1110+3408248..3416654expressed protein
LOC_Os10g06620OsAffx.18154.1.S1_at11/1110+3418414..3418668hypothetical protein
LOC_Os10g06630Os.15856.1.S1_at11/1110+3422622..3423545Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os10g06640NANA10+3430659..3435076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06650NANA10+3436782..3437165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.47463.1.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.14491.2.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06670OsAffx.18155.1.S1_x_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.18155.1.S1_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.1.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.3.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06680Os.5945.1.S1_at11/1110+3446976..3448411expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15856.1.S1_at--945--8591Chr10:3422949..3422973 (25 bp)
TGGTGCCCGGGTTCATGTGCCAGGG
LOC_Os10g06630
Os.15856.1.S1_at--294--1091Chr10:3422970..3422994 (25 bp)
AGGGCGGCGACATCACGGCCGGGAA
LOC_Os10g06630
Os.15856.1.S1_at--398--6711Chr10:3423052..3423076 (25 bp)
GTTCGCGGTGAAGCACGACGGGCCC
LOC_Os10g06630
Os.15856.1.S1_at--393--2091Chr10:3423297..3423321 (25 bp)
ACATACGTATATATGCCAGTGTATA
LOC_Os10g06630
Os.15856.1.S1_at--630--91Chr10:3423307..3423331 (25 bp)
ATATGCCAGTGTATACCGTATACGT
LOC_Os10g06630
Os.15856.1.S1_at--564--1011Chr10:3423444..3423468 (25 bp)
AGGTTGCGACATGGTGGTTACAAAC
LOC_Os10g06630
Os.15856.1.S1_at--904--9131Chr10:3423448..3423472 (25 bp)
TGCGACATGGTGGTTACAAACTATC
LOC_Os10g06630
Os.15856.1.S1_at--65--9391Chr10:3423471..3423495 (25 bp)
TCGAGGACGTTAGCTGCCTCACTGA
LOC_Os10g06630
Os.15856.1.S1_at--1058--5751Chr10:3423476..3423500 (25 bp)
GACGTTAGCTGCCTCACTGATGGTG
LOC_Os10g06630
Os.15856.1.S1_at--298--1971Chr10:3423491..3423515 (25 bp)
ACTGATGGTGACTTAATCTAGCTAC
LOC_Os10g06630
Os.15856.1.S1_at--415--7771Chr10:3423497..3423521 (25 bp)
GGTGACTTAATCTAGCTACCAGATA
LOC_Os10g06630
Target Sequence 
TGGTGCCCGGGTTCATGTGCCAGGGCGGCGACATCACGGCCGGGAACGGCACCGGCGGCGAGTCGGCGCTGGACGGCGCC
GCGAGGCACTTCCCCGACGAGGGGTTCGCGGTGAAGCACGACGGGCCCGGGGTGGTGTCCATGGCGAACGCCGGGCCCAA
CACCAACGGCTCCCAGTTCTTCATCACCGTCGACAAGGCGCCGTGGCTGGACGGCCGCCACGTCGCGTTCGGCCGCGTCG
TCGCCGGGATGGACGCCGTCCGCGCCATCGACAGGACGGGAACCTGGAGCGGCAAGACGGTGAAGCCCGTCGTCATCACC
GACTGCGGCGTGCTCTAGAAATACATATACATACGTATATATGCCAGTGTATACCGTATACGTACGTGTACCGGTGTACG
TACGTATGCTGTACGGTTCGGTATACATTAAAATTGTGTCTACTCTAGCTACTGTGTGATGAGCGTATGAGAGTGTTAGC
TGATGTAATTTTTTGAGGTTGCGACATGGTGGTTACAAACTATCGAGGACGTTAGCTGCCTCACTGATGGTGACTTAATC
TAGCTACCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis