Browse Element(s) Details


OsAffx.18155.1.S1_x_at

Description tigr:9638.m00583
TID=OsAffx.18155.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06620OsAffx.18154.1.S1_at11/1110+3418414..3418668hypothetical protein
LOC_Os10g06630Os.15856.1.S1_at11/1110+3422622..3423545Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os10g06640NANA10+3430659..3435076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06650NANA10+3436782..3437165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.47463.1.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.14491.2.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06670OsAffx.18155.1.S1_x_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.18155.1.S1_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.1.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.3.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06680Os.5945.1.S1_at11/1110+3446976..3448411expressed protein
LOC_Os10g06690NANA10+3448548..3449049expressed protein
LOC_Os10g06700Os.6251.1.S1_at11/1110+3452154..3453460F-box domain containing protein, expressed
LOC_Os10g06710OsAffx.8492.1.S1_at11/1110+3456306..3459335Amidase family protein, expressed
LOC_Os10g06720Os.7272.1.S1_at10/1110+3459712..3462343Aldose 1-epimerase family protein, expressed
LOC_Os10g06730NANA10+3467607..3468398transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18155.1.S1_x_at--417--4011Chr10:3443844..3443868 (25 bp)
CGTCGTGGTGGCGATGACCACATCT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--54--691Chr10:3443857..3443881 (25 bp)
ATGACCACATCTGCGGCTACGCGGA
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--665--4851Chr10:3443872..3443896 (25 bp)
GCTACGCGGAGGGAAGCCTATCGCT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--1152--8171Chr10:3443883..3443907 (25 bp)
GGAAGCCTATCGCTGGTGGCACACC
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--947--9151Chr10:3443974..3443998 (25 bp)
TGCGCGTGATGCACGCCATGGCAAG
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--1138--7371Chr10:3443979..3444003 (25 bp)
GTGATGCACGCCATGGCAAGGCACT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--923--1071Chr10:3444099..3444453 (25 bp)
AGGGCGAGCAATGTGCTGGCCCGTT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--1127--1471Chr10:3444435..3444459 (25 bp)
AGCAATGTGCTGGCCCGTTGGGACT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--456--8151Chr10:3444471..3444495 (25 bp)
GGAAACAATTTTCTGGGCCATGAAT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--1081--9451Chr10:3444482..3444506 (25 bp)
TCTGGGCCATGAATTTACTGGGCTT
LOC_Os10g06670
OsAffx.18155.1.S1_x_at--100--3491Chr10:3444489..3444513 (25 bp)
CATGAATTTACTGGGCTTTACCGGA
LOC_Os10g06670
Target Sequence 
CGTCGTGGTGGCGATGACCACATCTGCGGCTACGCGGAGGGAAGCCTATCGCTGGTGGCACACCCGACGGGGCTCGCAGC
GGTGGCGTGCGCGGCGACGCGGCTGTCCGCCGCAGGCACCAAGAGCGCCGTGCGCGTGATGCACGCCATGGCAAGGCACT
CGGCGACGCCGGCGGTGCTGCAGGAGATGCTGGCCGTCGGTGTGGGGGCGAGGCTGCTCTTCCTGGTGCAGGTCGGCGCC
TCCGGCGAGCAGACGAGGGCGAGGGCGAGCAATGTGCTGGCCCGTTGGGACTTGGGGACTGGAGGAAACAATTTTCTGGG
CCATGAATTTACTGGGCTTTACCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18155.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis