Browse Element(s) Details


Os.5945.1.S1_at

Description gb:AK108770.1
DB_XREF= gi:32993979
TID=Os.5945.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAa0034B05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H05, full insert sequence.
FL= gb:AK108770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0668011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06630Os.15856.1.S1_at11/1110+3422622..3423545Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os10g06640NANA10+3430659..3435076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06650NANA10+3436782..3437165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.47463.1.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.14491.2.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06670OsAffx.18155.1.S1_x_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.18155.1.S1_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.1.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.3.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06680Os.5945.1.S1_at11/1110+3446976..3448411expressed protein
LOC_Os10g06690NANA10+3448548..3449049expressed protein
LOC_Os10g06700Os.6251.1.S1_at11/1110+3452154..3453460F-box domain containing protein, expressed
LOC_Os10g06710OsAffx.8492.1.S1_at11/1110+3456306..3459335Amidase family protein, expressed
LOC_Os10g06720Os.7272.1.S1_at10/1110+3459712..3462343Aldose 1-epimerase family protein, expressed
LOC_Os10g06730NANA10+3467607..3468398transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5945.1.S1_at--684--4151Chr10:3447865..3447889 (25 bp)
CGCGCCATTGCCAGGTGACATGGGT
LOC_Os10g06680
Os.5945.1.S1_at--6--3792Chr10:3448160..3448184 (25 bp)
CTCGGCGCCATCTGAGGATTGGGAA
LOC_Os10g06680
Os.5945.1.S1_at--593--3551Chr10:3448168..3448192 (25 bp)
CATCTGAGGATTGGGAAGCAAGCTT
LOC_Os10g06680
Os.5945.1.S1_at--869--4951Chr10:3448223..3448247 (25 bp)
GCATAATGGCAGCTTATTTGGGTAA
LOC_Os10g06680
Os.5945.1.S1_at--1151--9211Chr10:3448270..3448294 (25 bp)
TCCTTTTTCCGTATGGATTGTAAAT
LOC_Os10g06680
Os.5945.1.S1_at--899--10791Chr10:3448287..3448311 (25 bp)
TTGTAAATTAGTCGTCGGAGGCCAT
LOC_Os10g06680
Os.5945.1.S1_at--96--891Chr10:3448305..3448329 (25 bp)
AGGCCATGGCCACCGAACGATCGAA
LOC_Os10g06680
Os.5945.1.S1_at--5--8451Chr10:3448311..3448335 (25 bp)
TGGCCACCGAACGATCGAATTTAGT
LOC_Os10g06680
Os.5945.1.S1_at--1153--6371Chr10:3448323..3448347 (25 bp)
GATCGAATTTAGTGTTTTCATCGGG
LOC_Os10g06680
Os.5945.1.S1_at--798--7671Chr10:3448346..3448370 (25 bp)
GGGTTTAATCAATCGCGAACAATTG
LOC_Os10g06680
Os.5945.1.S1_at--1034--2251Chr10:3448376..3448400 (25 bp)
AAATACACTTGTTTAAATCTCATCA
LOC_Os10g06680
Target Sequence 
CGCGCCATTGCCAGGTGACATGGGTGGCGACGCGGCTCTTGCGCCACTCCCAGGGGCCCTTGGCGGCGTCGACCCGGCGT
TCTCGCCATTGCCAGGGGACCTGCCTGACCCTGCTGCTGCTGCTGCTGCCGGCGGCGCCGCCGCAGGGGTTGGTGGTGTC
GGTGCCGGCGCTCTCGGCGCCGGCGCTGTCGGGGCGTTCGGAAGCCAGCCGCTGGTGGACAACAGCCCGTACGACAGCGG
GGCGTGGAAGGTCGACGGCCACCTCGTCGCCATTGTCGTCGCTCTCGGCGTCGTGCTCGGCGCCATCTGAGGATTGGGAA
GCAAGCTTGGGAATTGGNTTGAGATTTGAGGAGGAAAAGCATAATGGCAGCTTATTTGGGTAATTAATTGGTGTGGGTTT
AATTTTCCTTTTTCCGTATGGATTGTAAATTAGTCGTCGGAGGCCATGGCCACCGAACGATCGAATTTAGTGTTTTCATC
GGGGTTTAATCAATCGCGAACAATTGTAATCAAATACACTTGTTTAAATCTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis