Browse Element(s) Details


Os.5208.1.S1_at

Description gb:AK070137.1
DB_XREF= gi:32980161
TID=Os.5208.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042K04, full insert sequence.
FL= gb:AK070137.1 gb:AK103962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3605011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36000OsAffx.15769.1.S1_at11/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36000OsAffx.24232.1.S1_at2/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36010Os.4968.1.S1_at11/116+21047728..21048726Plastocyanin-like domain containing protein, expressed
LOC_Os06g36020NANA6+21054964..21058845retrotransposon protein, putative, unclassified
LOC_Os06g36030OsAffx.5025.1.S1_at4/116+21060009..21061010SWIM zinc finger family protein, expressed
LOC_Os06g36040NANA6+21062305..21062946expressed protein
LOC_Os06g36050Os.5208.1.S1_at11/116+21065265..21068929expressed protein
LOC_Os06g36060NANA6+21072819..21078104hypothetical protein
LOC_Os06g36070OsAffx.15770.1.S1_at11/116+21088971..21090313expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5208.1.S1_at--15--5351Chr06:21065809..21065833 (25 bp)
GAAGTTTCTAATGACCAGGCTGCAA
LOC_Os06g36050
Os.5208.1.S1_at--669--1071Chr06:21065774..21065798 (25 bp)
AGGGAACTCCCAAGAAGCGTCTGCT
LOC_Os06g36050
Os.5208.1.S1_at--38--5851Chr06:21065720..21065744 (25 bp)
GACCAAGCCTGTGGAGAACCAGAAT
LOC_Os06g36050
Os.5208.1.S1_at--1160--6211Chr06:21065648..21065672 (25 bp)
GATGGAAACCAGTGCTTCCACCAAT
LOC_Os06g36050
Os.5208.1.S1_at--645--2571Chr06:21065578..21065602 (25 bp)
AACGGCTCAAATGACAGTGGCGCTA
LOC_Os06g36050
Os.5208.1.S1_at--126--8471Chr06:21065561..21065585 (25 bp)
TGGCGCTAAACAGACTGGCACGACT
LOC_Os06g36050
Os.5208.1.S1_at--1035--151Chr06:21065470..21065494 (25 bp)
ATTTAGACGGGCTACTGCACATAGA
LOC_Os06g36050
Os.5208.1.S1_at--239--7891Chr06:21065432..21065456 (25 bp)
GGTTACGATCGTTTAGCTCATAGCA
LOC_Os06g36050
Os.5208.1.S1_at--497--3331Chr06:21065383..21065407 (25 bp)
CACTCTATGTGATCCGTGCTCAGAA
LOC_Os06g36050
Os.5208.1.S1_at--696--171Chr06:21065337..21065361 (25 bp)
ATTTTCTTCTTGACTCGTGTGGCTT
LOC_Os06g36050
Os.5208.1.S1_at--473--7511Chr06:21065319..21065343 (25 bp)
GTGGCTTTGGCCGAGACACTCAAAC
LOC_Os06g36050
Target Sequence 
GAAGTTTCTAATGACCAGGCTGCAAACACGGAGGCAGGGAACTCCCAAGAAGCGTCTGCTGCAGAAGCTGCAAATGGCTC
TTCAGAAGAGACCAAGCCTGTGGAGAACCAGAATGATGGGAATACAGAGTCGTCTAACAATGGTGAGCAGGTGGATATCA
AGATGGAAACCAGTGCTTCCACCAATGCCGAGCAGAAGGAATCTCAAGTCGGCGATGGCAGCTNTGGGTCGAACGGCTCA
AATGACAGTGGCGCTAAACAGACTGGCACGACTGAAACCCAGTGATACAACAACCAATTGGACATGAACATTGTTTATTA
TACGGATTTATCCCTGAAAATTTAGACGGGCTACTGCACATAGAATTTTCAGGTTGAGGTTACGATCGTTTAGCTCATAG
CAAATGTATGGTTGGTGCCAATAGTGCACTCTATGTGATCCGTGCTCAGAAAGACAATCGACTATCGAATGTATTTTCTT
CTTGACTCGTGTGGCTTTGGCCGAGACACTCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis