Browse Element(s) Details


Os.52169.1.S1_at

Description gb:AK065411.1
DB_XREF= gi:32975429
TID=Os.52169.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023N10, full insert sequence.
FL= gb:AK065411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0669011/11HECT-domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06670Os.1814.1.S1_a_at11/115+3437635..3443885oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g06680Os.1814.3.A1_at11/115+3441606..3446708expressed protein
LOC_Os05g06690Os.52169.1.S1_at11/115+3450334..3463103HECT-domain-containing protein, putative, expressed
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed
LOC_Os05g06710Os.15072.1.S1_at11/115+3470699..3474778GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06720Os.8555.1.S1_at11/115+3477116..3478845GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52169.1.S1_at--222--5411Chr05:3462411..3462431 (21 bp)
GAAGCTCCCTCCTTATAGAAACAAG
LOC_Os05g06690
Os.52169.1.S1_at--1003--9811Chr05:3462616..3462640 (25 bp)
TAAAATCGGCTTTTGGACCAAATAT
LOC_Os05g06690
Os.52169.1.S1_at--401--1071Chr05:3462785..3462809 (25 bp)
AGGGAGGCAACAGCCAGCTGCTCAA
LOC_Os05g06690
Os.52169.1.S1_at--511--3871Chr05:3462857..3462881 (25 bp)
CTGTTGTTGTAATCAGCCGTGAACT
LOC_Os05g06690
Os.52169.1.S1_at--1089--9651Chr05:3462869..3462893 (25 bp)
TCAGCCGTGAACTTGTACATGTATT
LOC_Os05g06690
Os.52169.1.S1_at--425--2091Chr05:3462885..3462909 (25 bp)
ACATGTATTTTTACCAACGTTGTGG
LOC_Os05g06690
Os.52169.1.S1_at--488--2591Chr05:3462900..3462924 (25 bp)
AACGTTGTGGTTGGTTGATGTCCTC
LOC_Os05g06690
Os.52169.1.S1_at--806--6651Chr05:3462913..3462937 (25 bp)
GTTGATGTCCTCTCGTGGAGTTGTG
LOC_Os05g06690
Os.52169.1.S1_at--74--9331Chr05:3462977..3463001 (25 bp)
TCGCTGTAGCTGTACTTTGGTGTTG
LOC_Os05g06690
Os.52169.1.S1_at--107--2051Chr05:3462990..3463014 (25 bp)
ACTTTGGTGTTGGTGTTGCTGTCAT
LOC_Os05g06690
Os.52169.1.S1_at--800--6891Chr05:3463015..3463039 (25 bp)
GTAAGGTAACCCTAACACCAGCTGC
LOC_Os05g06690
Target Sequence 
GAAGCTCCCTCCTTATAGAAACAAGACACAATTGGAAAGCAAATTGTTGTACGCGATAAATGCAGAAGCTGGTTTTGATN
TAAGTTAAAATCGGCTTTTGGACCAAATATTGTGCAGTGTAGATAGTTTCTAGGTAACAGATTAAAGGCACCCAAGGGCC
AAAACNCCGACCTNTGGGCCCCCTTTTGAGCCCCCCATAAAGTAAAAGGAAGGATCGATTCCAGGAGGAGGTAAGCGAAA
NTGAAGACACGAGGAGGGAGGCAACAGCCAGCTGCTCAAGTGNTGATTAGGCCGGTGATAAATTATTCACCTTAAATAAG
CAGATGCTGTTGTTGTAATCAGCCGTGAACTTGTACATGTATTTTTACCAACGTTGTGGTTGGTTGATGTCCTCTCGTGG
AGTTGTGGGATGACATGTTAGTTGGGTTTGGAAACCGGCATCAGCGTCGCTGTAGCTGTACTTTGGTGTTGGTGTTGCTG
TCATGTAAGGTAACCCTAACACCAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis