Browse Element(s) Details


Os.52279.1.S1_at

Description gb:AK066050.1
DB_XREF= gi:32976068
TID=Os.52279.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050F13, full insert sequence.
FL= gb:AK066050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4328010/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43260OsAffx.20387.1.S1_x_at3/112+26051049..26056208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43280Os.10493.1.S1_at11/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.52279.1.S1_at10/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_s_at8/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_x_at5/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43290Os.18692.1.S1_at11/112+26084581..26086052Protein kinase domain containing protein, expressed
LOC_Os02g43300Os.13466.1.S1_at11/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.12779.1.A1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.2477.1.S1_x_at1/112+26093367..26096718expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009536cellular_componentplastid
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52279.1.S1_at--817--5191Chr02:26075786..26075810 (25 bp)
GAATTGAATTGCTCGTACTTTCTCA
LOC_Os02g43280
Os.52279.1.S1_at--316--4651Chr02:26075796..26075820 (25 bp)
GCTCGTACTTTCTCATGAACTTAAG
LOC_Os02g43280
Os.52279.1.S1_at--693--8311Chr02:26075835..26075859 (25 bp)
GGCTAATAGTCCATGATGCACGTTA
LOC_Os02g43280
Os.52279.1.S1_at--809--6871Chr02:26075865..26075889 (25 bp)
GTATTAGAGTCAGGCATGGAATTCA
LOC_Os02g43280
Os.52279.1.S1_at--149--2411Chr02:26075915..26075939 (25 bp)
AAAACTTGAAGCTCTTCCATTCCAT
LOC_Os02g43280
Os.52279.1.S1_at--271--6911NONE
GTATCTGCTCTAAGGTACAACATCC
NONE
Os.52279.1.S1_at--410--1011Chr02:26076203..26076227 (25 bp)
AGGTACAACATCCACATGATTCATG
LOC_Os02g43280
Os.52279.1.S1_at--626--10751Chr02:26076235..26076259 (25 bp)
TTGAAGTGAACCGTTGGCTCTCTCT
LOC_Os02g43280
Os.52279.1.S1_at--1118--8311Chr02:26076250..26076274 (25 bp)
GGCTCTCTCTCATTAGCTCAAGTTT
LOC_Os02g43280
Os.52279.1.S1_at--808--10351Chr02:26076273..26076297 (25 bp)
TTTTTGGTTGACTTGGTTGACGCAT
LOC_Os02g43280
Os.52279.1.S1_at--1037--8571Chr02:26076286..26076310 (25 bp)
TGGTTGACGCATGTACTCCATCCGT
LOC_Os02g43280
Target Sequence 
GAATTGAATTGCTCGTACTTTCTCATGAACTTAAGTTTTTAAGCGAGTTGGCTAATAGTCCATGATGCACGTTAATATGG
TATTAGAGTCAGGCATGGAATTCATATGATAGCTGATGTGATTAAATGAAAAACTTGAAGCTCTTCCATTCCATGTATTA
TAAGAGCAAGTTTAATAGTACAATCAACTACTAGCTCCAAATCATTTGTAATCAATTTAATAGCTAATTCATACAATAAG
AACATATAAACGTATACTACACTATTAGCACATAGTCCCACCTGCCATACATACATTTTGTCTAGGAGCCCGTGCTGCAG
CTAGCAACAAATTTGTAGCCCGCTGCTCATCTCTCTTTTTTTATTTCCTTGATATGTGTTTATAGCTGGCATATAGCCTG
GTATTGTATCTGCTCTAAGGTACAACATCCACATGATTCATGTGGAGTTTTGAAGTGAACCGTTGGCTCTCTCTCATTAG
CTCAAGTTTTTTGGTTGACTTGGTTGACGCATGTACTCCATCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis