Browse Element(s) Details


Os.52290.1.S2_at

Description gb:AK066123.1
DB_XREF= gi:32976141
TID=Os.52290.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055A22, full insert sequence.
FL= gb:AK066123.1 gb:AK068676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g446002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44570NANA8+27893495..27899650retrotransposon protein, putative, unclassified
LOC_Os08g44580Os.28943.1.S1_x_at1/118+27900293..27903491retrotransposon protein, putative, unclassified
LOC_Os08g44590Os.54927.1.S1_at11/118+27910366..27912739oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g44600Os.52290.1.S2_at2/118+27913627..27917536hypothetical protein
LOC_Os08g44610NANA8+27923604..27924038hypothetical protein
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed
LOC_Os08g44650Os.11783.1.S1_at11/118+27942045..27944263J domain protein C21orf55 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52290.1.S2_at--250--5311Chr01:171340..171364 (25 bp)
GAAGGAGCTGCTGGCTTAGTCGCAT
NONE
Os.52290.1.S2_at--1038--8291Chr01:171352..171376 (25 bp)
GGCTTAGTCGCATGCAGCAGGCTGA
NONE
Os.52290.1.S2_at--581--10372Chr01:171386..171410 (25 bp)
TTTTATCTCGGTTCTGCTGCTTCAA
NONE
Os.52290.1.S2_at--113--3051Chr01:171425..171449 (25 bp)
AATCGCTCGTCCTATTCTCTATTAG
NONE
Os.52290.1.S2_at--784--9513Chr05:28301130..28301154 (25 bp)
TCTCTATTAGGATTTCTCTCTCTTC
NONE
Os.52290.1.S2_at--572--7751Chr01:171478..171502 (25 bp)
GGTGACGTGGTCAGTTATTTCGCCG
NONE
Os.52290.1.S2_at--1018--10191Chr01:171493..171517 (25 bp)
TATTTCGCCGGCTAACTGTGCTTCA
NONE
Os.52290.1.S2_at--402--3891Chr01:171508..171532 (25 bp)
CTGTGCTTCACTATACTTGCTCTAA
NONE
Os.52290.1.S2_at--487--5831Chr01:171627..171651 (25 bp)
GACCGGTAGCTGTATCAGTCGTGAA
NONE
Os.52290.1.S2_at--367--7931Chr01:171714..171738 (25 bp)
GGATTGACACACACACATAGTACTC
NONE
Os.52290.1.S2_at--266--7011Chr01:171733..171757 (25 bp)
GTACTCTCTCCGTTACAAAATGATG
NONE
Target Sequence 
GAAGGAGCTGCTGGCTTAGTCGCATGCAGCAGGCTGAGAAGAAGCTTTTTATCTCGGTTCTGCTGCTTCAAGCGAGCGTC
TCACCAATCGCTCGTCCTATTCTCTATTAGGATTTCTCTCTCTTCCACCTCAGATTTGGGTGACGTGGTCAGTTATTTCG
CCGGCTAACTGTGCTTCACTATACTTGCTCTAAATAAGTCAAAGCCTAAAAAATATTAATTATTCCCTCCCTCACAAGAG
GAATGTACTAGGGACTAGGAGAGAGCAGCAGCATCAGCAATTAAGGAGACCGGTAGCTGTATCAGTCGTGAATTATTTTT
TTTACTAGCTATCAAAGAACAGTCGTACGTGAATGTATTAACCATATATGTGATGGATTGACACACACACATAGTACTCT
CTCCGTTACAAAATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52290.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis