Browse Element(s) Details


Os.7754.1.S1_at

Description gb:AK119519.1
DB_XREF= gi:37989142
TID=Os.7754.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C12, full insert sequence.
FL= gb:AK119519.1 gb:AK101389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4464010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44590Os.54927.1.S1_at11/118+27910366..27912739oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g44600Os.52290.1.S2_at2/118+27913627..27917536hypothetical protein
LOC_Os08g44610NANA8+27923604..27924038hypothetical protein
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed
LOC_Os08g44650Os.11783.1.S1_at11/118+27942045..27944263J domain protein C21orf55 homolog, putative, expressed
LOC_Os08g44660Os.12324.1.S1_at11/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44660OsAffx.28370.1.S1_x_at3/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44670OsAffx.6138.1.S1_at10/118+27948536..27949829calreticulin, putative
LOC_Os08g44680Os.7974.1.S1_at11/118+27950488..27951396Photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
LOC_Os08g44690Os.25411.1.A1_at6/118+27952454..27953365transposon protein, putative, Pong sub-class
LOC_Os08g44700NANA8+27955994..27962149retrotransposon protein, putative, unclassified
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7754.1.S1_at--335--1471Chr08:27939778..27939802 (25 bp)
AGAATCCTTGAGGTCGACGAGCTTC
LOC_Os08g44640
Os.7754.1.S1_at--476--10871Chr08:27939809..27939833 (25 bp)
TTGGCCTCAACGTCACAATCTATAG
LOC_Os08g44640
Os.7754.1.S1_at--1020--291NONE
ATAGCGGACAGCTTGATCTGATCTG
NONE
Os.7754.1.S1_at--1023--9471Chr08:27940706..27940730 (25 bp)
TCTGATCTGTGCGACCAAGGGAACA
LOC_Os08g44640
Os.7754.1.S1_at--907--5371Chr08:27940888..27940912 (25 bp)
GAAGAACTTCACAAACTCACGCAGA
LOC_Os08g44640
Os.7754.1.S1_at--81--1351Chr08:27940910..27940934 (25 bp)
AGAGTGCCGCTCTACTGCAGTGGTG
LOC_Os08g44640
Os.7754.1.S1_at--758--2611Chr08:27941467..27941491 (25 bp)
AACCCTTGCCCTGCATTGAAGATGC
LOC_Os08g44640
Os.7754.1.S1_at--30--151Chr08:27941500..27941524 (25 bp)
ATTACACAATCTCCTGCTCAGTAGA
LOC_Os08g44640
Os.7754.1.S1_at--1156--8951Chr08:27941536..27941560 (25 bp)
TGACACTACATGCTGACACCAACTG
LOC_Os08g44640
Os.7754.1.S1_at--190--10591Chr08:27941571..27941595 (25 bp)
TTCTCCTTAATTTCTACTTTCACCT
LOC_Os08g44640
Os.7754.1.S1_at--990--8571Chr08:27941713..27941737 (25 bp)
TGGTTTTTCGGTGACAGGGTACAAT
LOC_Os08g44640
Target Sequence 
AGAATCCTTGAGGTCGACGAGCTTCTCAACCTTGGCCTCAACGTCACAATCTATAGCGGACAGCTTGATCTGATCTGTGC
GACCAAGGGAACATTGGATTGGATTCAGAAACTCAAGTGGGATGGTCTGAAGAACTTCACAAACTCACGCAGAGTGCCGC
TCTACTGCAGTGGTGGTGAAGCAGCTGGCACCCAAGCCTTCCTCAAATCTTACAAGAATCTCAAATTCTACTGGATACTG
GGAGCTGGCCACATGGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACACAATCTCCTGCTCA
GTAGAAAAGAGGAGGATGACACTACATGCTGACACCAACTGAAGATTCTTTTTCTCCTTAATTTCTACTTTCACCTTTTT
ACACAGAAAAGAAAAAGGATATCATAGCATTGATGAGATAAGAAAAGATAGCAGAGTGATATAAATAGAGAGAGAGAGAT
CTGTTTCACTTTATATTATAGTACTGGTGCAGCTGGTTTTTCGGTGACAGGGTACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis