Browse Element(s) Details


OsAffx.6138.1.S1_at

Description tigr:9636.m04555
TID=OsAffx.6138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to calreticulin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4467010/11calreticulin, putative
LOC_Os03g592642/11Calreticulin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44610NANA8+27923604..27924038hypothetical protein
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed
LOC_Os08g44650Os.11783.1.S1_at11/118+27942045..27944263J domain protein C21orf55 homolog, putative, expressed
LOC_Os08g44660Os.12324.1.S1_at11/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44660OsAffx.28370.1.S1_x_at3/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44670OsAffx.6138.1.S1_at10/118+27948536..27949829calreticulin, putative
LOC_Os08g44680Os.7974.1.S1_at11/118+27950488..27951396Photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
LOC_Os08g44690Os.25411.1.A1_at6/118+27952454..27953365transposon protein, putative, Pong sub-class
LOC_Os08g44700NANA8+27955994..27962149retrotransposon protein, putative, unclassified
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified
LOC_Os08g44720NANA8+27968634..27971367retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6138.1.S1_at--146--7612Chr08:27948574..27948598 (25 bp)
GGGAATGTACAGTGACGTCCTCGCG
LOC_Os08g44670
OsAffx.6138.1.S1_at--460--2992Chr08:27948577..27948601 (25 bp)
AATGTACAGTGACGTCCTCGCGCTC
LOC_Os08g44670
OsAffx.6138.1.S1_at--946--9331Chr08:27948600..27948624 (25 bp)
TCGCGGTGACCATGGTTCTTGATCA
LOC_Os08g44670
OsAffx.6138.1.S1_at--114--5851Chr08:27948607..27948631 (25 bp)
GACCATGGTTCTTGATCACGAGGAT
LOC_Os08g44670
OsAffx.6138.1.S1_at--853--7891Chr08:27948613..27948637 (25 bp)
GGTTCTTGATCACGAGGATTTTACA
LOC_Os08g44670
OsAffx.6138.1.S1_at--955--6151Chr08:27948626..27948648 (23 bp)
GAGGATTTTACAGGCGTGCGCGTTA
LOC_Os08g44670
OsAffx.6138.1.S1_at--289--10371NONE
TTTTACAGGCGTGCGCGTTAAGTCG
NONE
OsAffx.6138.1.S1_at--642--1291Chr08:27949375..27949395 (21 bp)
AGATGCTGAGAAAACTGCCTTCGAT
LOC_Os08g44670
OsAffx.6138.1.S1_at--914--4731Chr08:27949375..27949399 (25 bp)
GCTGAGAAAACTGCCTTCGATGAGG
LOC_Os08g44670
OsAffx.6138.1.S1_at--331--8911Chr08:27949721..27949745 (25 bp)
TGAGCAGACAAAGGACTCGGATGAT
LOC_Os08g44670
OsAffx.6138.1.S1_at--1052--5711Chr08:27949734..27949758 (25 bp)
GACTCGGATGATGATAAACCACAGG
LOC_Os08g44670
Target Sequence 
GGGAATGTACAGTGACGTCCTCGCGCTCGCGGTGACCATGGTTCTTGATCACGAGGATTTTACAGGCGTGCGCGTTAAGT
CGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAG
CATAAAGATGCTGAGAAAACTGCCTTCGATGAGGCCGAGAAGAGGAGGCTTGAGGAGGATGATGAGGATGAGGCGGACGA
TGACAAGGCTGATGTAGTTGCTGAGCAGACAAAGGACTCGGATGATGATAAACCACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis