Browse Element(s) Details


Os.12324.1.S1_at

Description gb:AK121445.1
DB_XREF= gi:37991068
TID=Os.12324.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141E01, full insert sequence.
FL= gb:AK121445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4466011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44610NANA8+27923604..27924038hypothetical protein
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed
LOC_Os08g44650Os.11783.1.S1_at11/118+27942045..27944263J domain protein C21orf55 homolog, putative, expressed
LOC_Os08g44660Os.12324.1.S1_at11/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44660OsAffx.28370.1.S1_x_at3/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44670OsAffx.6138.1.S1_at10/118+27948536..27949829calreticulin, putative
LOC_Os08g44680Os.7974.1.S1_at11/118+27950488..27951396Photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
LOC_Os08g44690Os.25411.1.A1_at6/118+27952454..27953365transposon protein, putative, Pong sub-class
LOC_Os08g44700NANA8+27955994..27962149retrotransposon protein, putative, unclassified
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified
LOC_Os08g44720NANA8+27968634..27971367retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009612biological_processresponse to mechanical stimulus
GO:0009646biological_processresponse to absence of light
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010038biological_processresponse to metal ion
GO:0019722biological_processcalcium-mediated signaling
GO:0042542biological_processresponse to hydrogen peroxide
GO:0048574biological_processlong-day photoperiodism, flowering
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12324.1.S1_at--500--4771Chr08:27944691..27944715 (25 bp)
GCTGCTTCATCTGCTGACATGGAGA
LOC_Os08g44660
Os.12324.1.S1_at--319--251Chr08:27944754..27944778 (25 bp)
ATATCGCTGTCGGAGCTGACGGACG
LOC_Os08g44660
Os.12324.1.S1_at--302--711Chr08:27944823..27944847 (25 bp)
ATGATGGCCGAGATCGACACCGACG
LOC_Os08g44660
Os.12324.1.S1_at--124--2611Chr08:27944895..27944919 (25 bp)
AACCCTGGCCTCATGAAGGACGTCG
LOC_Os08g44660
Os.12324.1.S1_at--202--2931Chr08:27944910..27944934 (25 bp)
AAGGACGTCGCCAAGGTCTTCTGAT
LOC_Os08g44660
Os.12324.1.S1_at--199--4371Chr08:27944919..27944943 (25 bp)
GCCAAGGTCTTCTGATTCTTTTTTC
LOC_Os08g44660
Os.12324.1.S1_at--335--10311Chr08:27944940..27944964 (25 bp)
TTTCTTTATCTCTCATCGCTTCCCA
LOC_Os08g44660
Os.12324.1.S1_at--305--10331Chr08:27945021..27945045 (25 bp)
TTTCATTTCTACCACTACCAGCAGC
LOC_Os08g44660
Os.12324.1.S1_at--811--1671Chr08:27945043..27945067 (25 bp)
AGCCTCTGCTAGCTGCTTCATTATT
LOC_Os08g44660
Os.12324.1.S1_at--74--6811Chr08:27945113..27945137 (25 bp)
GTTTTATTCGTTTGTACCTCGCGCA
LOC_Os08g44660
Os.12324.1.S1_at--1084--6971Chr08:27945126..27945150 (25 bp)
GTACCTCGCGCATATATGCCTTAAT
LOC_Os08g44660
Target Sequence 
GCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTGTCGGAGCT
GACGGACGCGCTGCGGACGCTGGGGTCGACATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACACCGACGGCG
ACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATGAAGGACGTCGCCAAGGTCTTC
TGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTA
TATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGAT
CCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis