Browse Element(s) Details


Os.7974.1.S1_at

Description gb:AK072473.1
DB_XREF= gi:32982496
TID=Os.7974.1
CNT=59
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23061 chloroplast photosystem I reaction center subunit II precursor-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full insert sequence.
FL= gb:AK061775.1 gb:AK120372.1 gb:AY224449.1 gb:AK072473.1 gb:AK120366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4468011/11Photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed
LOC_Os08g44650Os.11783.1.S1_at11/118+27942045..27944263J domain protein C21orf55 homolog, putative, expressed
LOC_Os08g44660Os.12324.1.S1_at11/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44660OsAffx.28370.1.S1_x_at3/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44670OsAffx.6138.1.S1_at10/118+27948536..27949829calreticulin, putative
LOC_Os08g44680Os.7974.1.S1_at11/118+27950488..27951396Photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
LOC_Os08g44690Os.25411.1.A1_at6/118+27952454..27953365transposon protein, putative, Pong sub-class
LOC_Os08g44700NANA8+27955994..27962149retrotransposon protein, putative, unclassified
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified
LOC_Os08g44720NANA8+27968634..27971367retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009538cellular_componentphotosystem I reaction center
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7974.1.S1_at--901--6171Chr08:27951039..27951063 (25 bp)
GAGGAGTTCTACGTCATCACATGGA
LOC_Os08g44680
Os.7974.1.S1_at--120--371Chr08:27951024..27951048 (25 bp)
ATCACATGGACGTCGCCCAAGGAGC
LOC_Os08g44680
Os.7974.1.S1_at--974--4331Chr08:27950903..27950927 (25 bp)
CCAGGCTCCGCTCCAAGTACAAGAT
LOC_Os08g44680
Os.7974.1.S1_at--64--2811Chr08:27950883..27950907 (25 bp)
AAGATCAACTACCAGTTCTACCGCG
LOC_Os08g44680
Os.7974.1.S1_at--1042--7131Chr08:27950859..27950883 (25 bp)
GTCTTCCCCAATGGCGAGGTGCAGT
LOC_Os08g44680
Os.7974.1.S1_at--187--7191Chr08:27950778..27950802 (25 bp)
GTCGGCCAGAACTTCCGCAGCATCG
LOC_Os08g44680
Os.7974.1.S1_at--938--5431Chr08:27950713..27950737 (25 bp)
GAACGTCTTCGACATCTAGACTTCT
LOC_Os08g44680
Os.7974.1.S1_at--304--10571Chr08:27950677..27950701 (25 bp)
TTCTTCTCTCATAATCGACCTATTA
LOC_Os08g44680
Os.7974.1.S1_at--23--471Chr08:27950664..27950688 (25 bp)
ATCGACCTATTAATTACTTGTGTTT
LOC_Os08g44680
Os.7974.1.S1_at--233--10511Chr08:27950618..27950642 (25 bp)
TTAATCATCTGTCAGGCTGCTCTTC
LOC_Os08g44680
Os.7974.1.S1_at--666--6251Chr08:27950567..27950591 (25 bp)
GATGGTGGGATATAATCTCTTCTTA
LOC_Os08g44680
Target Sequence 
GAGGAGTTCTACGTCATCACATGGACGTCGCCCAAGGAGCAGGTGTTCGAGATGCCCACGGGCGGCGCCGCCATCATGCG
CGAGGGCCCCAACCTGCTGAANGCTGGGCCAGGAAGGAGCAGTGCCTGGCCCTGGGCACCAGGCTCCGCTCCAAGTACAA
GATCAACTACCAGTTCTACCGCGTCTTCCCCAATGGCGAGGTGCAGTACCTCCACCCCAAGGACGGCGTCTACCCGGAGA
AGGTCAACGCCGGCAGGCAGGGCGTCGGCCAGAACTTCCGCAGCATCGGCAAGAACGTCAGCCCCATCGAGGTCAAGTTC
ACCGGCAAGAACGTCTTCGACATCTAGACTTCTTCTTCTTCTTCTTCTTCTCTCATAATCGACCTATTAATTACTTGTGT
TTTGGGTGGATGGACATGTAATTTTAATCATCTGTCAGGCTGCTCTTCAGTTATTGATGATGGTGTAATCGATCGATGGT
GGGATATAATCTCTTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis