Browse Element(s) Details


Os.52296.1.S1_at

Description gb:AK066170.1
DB_XREF= gi:32976188
TID=Os.52296.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055C24, full insert sequence.
FL= gb:AK066170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g058901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05840Os.21524.2.S1_x_at11/1110+2934353..2935237expressed protein
LOC_Os10g05840Os.46085.1.S1_x_at4/1110+2934353..2935237expressed protein
LOC_Os10g05849NANA10+2940979..2941180NA
LOC_Os10g05860Os.21524.2.S1_x_at9/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05860Os.46085.1.S1_x_at5/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05880Os.21524.2.S1_x_at5/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05880Os.46085.1.S1_x_at2/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05890Os.48033.1.S1_at10/1110+2954960..2956626hypothetical protein
LOC_Os10g05890Os.52296.1.S1_at1/1110+2954960..2956626hypothetical protein
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52296.1.S1_at--680--10591Chr07:8483371..8483395 (25 bp)
TTCTCCTCAATTCGCGAGCGTGATA
NONE
Os.52296.1.S1_at--533--3951Chr07:8483301..8483325 (25 bp)
CGGCAACTGCCTTCGAGAGTGGCGA
NONE
Os.52296.1.S1_at--610--4211Chr07:8483215..8483239 (25 bp)
CCGCTGTCGCATGCTTTAGCGAGGA
NONE
Os.52296.1.S1_at--53--4992Chr07:8483207..8483231 (25 bp)
GCATGCTTTAGCGAGGAGAGGAATT
NONE
Os.52296.1.S1_at--442--6932Chr10:2955516..2955537 (22 bp)
GTAGGATCAAAACCACTCCAGATTG
LOC_Os10g05890
Os.52296.1.S1_at--36--5992Chr07:8482995..8483019 (25 bp)
GAGGGTGTCAAATGTCTAGTTTTAA
NONE
Os.52296.1.S1_at--930--7071Chr07:8482959..8482983 (25 bp)
GTAATTCAGACGACCTAAATAGTTC
NONE
Os.52296.1.S1_at--353--9771Chr07:8482906..8482930 (25 bp)
TAAGGTAATTTATCATCCGAACATT
NONE
Os.52296.1.S1_at--564--3531Chr07:8482893..8482917 (25 bp)
CATCCGAACATTTTCATTATAGTTG
NONE
Os.52296.1.S1_at--1006--7872Chr08:17867479..17867501 (23 bp)
GGTTTTAGCTGCAGGACACTGCATA
NONE
Os.52296.1.S1_at--744--5011Chr07:8482835..8482859 (25 bp)
GCAGGACACTGCATAAAGTGACTTT
NONE
Target Sequence 
TTCTCCTCAATTCGCGAGCGTGATAAGGGGATCGAGCTCCTCACCGTGGCTCCTCAACAACGACGGTCTCCGGCAACTGC
CTTCGAGAGTGGCGACTTGGTGGTGTGCTTGTTGTGCCGAGGAGGAGAAAGCCCGGCCGGCAAGCTCGACGGTCGGCCGC
TGTCGCATGCTTTAGCGAGGAGAGGAATTCAAGAGAAGAGATAGAGAGGGATACGGATTGAGAAAGACAAGAGGATAGAG
GTGAGGGATAGATATGACAAGTGGGCCCACCGAACTTTTTTAAAGAATTGCTGACTGGACTGTCACGCGTATGCCACGTA
GGATCAAAACCACTCCAGATTGGGTTAGGGGGGTTATTTGTCTAGTTTTAGTAGTTGAGGGTGTCAAATGTCTAGTTTTA
AAGTCTAAGGGGGTAATTCAGACGACCTAAATAGTTCAGGGGGATAATTCGTACTTTTTTTTTCTTAAGGTAATTTATCA
TCCGAACATTTTCATTATAGTTGGATAAAGGACATAATGACTTTGTGGTTTTAGCTGCAGGACACTGCATAAAGTGACTT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis