Browse Element(s) Details


Os.5230.1.S1_at

Description gb:AK061183.1
DB_XREF= gi:32971201
TID=Os.5230.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D11, full insert sequence.
FL= gb:AK061183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3081011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30770OsAffx.19092.1.S1_at11/1111+17424020..17424454hypothetical protein
LOC_Os11g30780NANA11+17430176..17430932hypothetical protein
LOC_Os11g30790Os.52356.1.S1_at2/1111+17431614..17437815expressed protein
LOC_Os11g30810Os.5230.1.S1_at11/1111+17440824..17442659Sulfotransferase domain containing protein, expressed
LOC_Os11g30820Os.15237.1.S1_at11/1111+17443380..17445669expressed protein
LOC_Os11g30830NANA11+17450136..17450678Flavonol sulfotransferase, putative
LOC_Os11g30840NANA11+17450910..17454486retrotransposon protein, putative, unclassified
LOC_Os11g30850OsAffx.22385.1.S1_x_at3/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30850OsAffx.20329.1.S1_at1/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30860NANA11+17459206..17462217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30870Os.39764.1.S1_at6/1111+17462561..17464283hypothetical protein
LOC_Os11g30870Os.39764.1.S1_x_at5/1111+17462561..17464283hypothetical protein
LOC_Os11g30880NANA11+17467650..17468333retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5230.1.S1_at--535--1951Chr11:17442061..17442085 (25 bp)
ACTGGCGCCACGTGCTGGAGTATTG
LOC_Os11g30810
Os.5230.1.S1_at--873--7991Chr11:17442100..17442124 (25 bp)
GGAGGCCACAGAAGGTTCTCTTCCT
LOC_Os11g30810
Os.5230.1.S1_at--564--6311Chr11:17442137..17442161 (25 bp)
GATGACACGAGAGACGACGAGCAAC
LOC_Os11g30810
Os.5230.1.S1_at--387--5291Chr11:17442284..17442308 (25 bp)
GAATGGTGCCAATGATTTCAACATC
LOC_Os11g30810
Os.5230.1.S1_at--791--5731Chr11:17442345..17442369 (25 bp)
GACTGGGCCAATTATTTGTCACCTG
LOC_Os11g30810
Os.5230.1.S1_at--643--211Chr11:17442358..17442382 (25 bp)
ATTTGTCACCTGAGATGGCGGCACA
LOC_Os11g30810
Os.5230.1.S1_at--340--7131Chr11:17442393..17442417 (25 bp)
GTCATTGACGACGAGTTGCGGTCCT
LOC_Os11g30810
Os.5230.1.S1_at--623--1011Chr11:17442468..17442492 (25 bp)
AGGTATAGCCCATCGACCGGCCTTG
LOC_Os11g30810
Os.5230.1.S1_at--1160--2791Chr11:17442529..17442553 (25 bp)
AAGATCCATCGCAGTTACCTGCTAC
LOC_Os11g30810
Os.5230.1.S1_at--1161--3431Chr11:17442540..17442564 (25 bp)
CAGTTACCTGCTACTACTGCTAGTA
LOC_Os11g30810
Os.5230.1.S1_at--594--1171Chr11:17442561..17442585 (25 bp)
AGTAGTACATACACCCAAAGCATTG
LOC_Os11g30810
Target Sequence 
ACTGGCGCCACGTGCTGGAGTATTGGGCAGAGAGCAAGAGGAGGCCACAGAAGGTTCTCTTCCTCCGCTACGAGGAGATG
ACACGAGAGACGACGAGCAACGTGAGGAAGCTGGCCGAGTTCATGGGCTGCCCGTTCTCCGGCGAGGAGGAGGCAGACGG
CGTGCCGGACGCCATCGTCGGCCTCTGCAGCTTNGACCATNTCAGGAGCTTGGAGGTAAACAGGAATGGTGCCAATGATT
TCAACATCAAAAACGACTCGTTNTACCGAAAGGGGGTGGCTGGAGACTGGGCCAATTATTTGTCACCTGAGATGGCGGCA
CAGCTGGATNTGGTCATTGACGACGAGTTGCGGTCCTNTGGGTTTAGCTTTGCCNCCGGTGGACGGTAACTCAGCATGAN
CCGCCNCAGGTATAGCCCATCGACCGGCCTTGTGGTCGGACCNCGGTGATCGATGCATGCTGCGCAANAAGATCCATCGC
AGTTACCTGCTACTACTGCTAGTAGTACATACACCCAAAGCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis