Browse Element(s) Details


Os.52356.1.S1_at

Description gb:AK066621.1
DB_XREF= gi:32976639
TID=Os.52356.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069F04, full insert sequence.
FL= gb:AK066621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g307902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30760Os.52147.1.S1_at11/1111+17408324..17409291expressed protein
LOC_Os11g30770OsAffx.19092.1.S1_at11/1111+17424020..17424454hypothetical protein
LOC_Os11g30780NANA11+17430176..17430932hypothetical protein
LOC_Os11g30790Os.52356.1.S1_at2/1111+17431614..17437815expressed protein
LOC_Os11g30810Os.5230.1.S1_at11/1111+17440824..17442659Sulfotransferase domain containing protein, expressed
LOC_Os11g30820Os.15237.1.S1_at11/1111+17443380..17445669expressed protein
LOC_Os11g30830NANA11+17450136..17450678Flavonol sulfotransferase, putative
LOC_Os11g30840NANA11+17450910..17454486retrotransposon protein, putative, unclassified
LOC_Os11g30850OsAffx.22385.1.S1_x_at3/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30850OsAffx.20329.1.S1_at1/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30860NANA11+17459206..17462217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30870Os.39764.1.S1_at6/1111+17462561..17464283hypothetical protein
LOC_Os11g30870Os.39764.1.S1_x_at5/1111+17462561..17464283hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52356.1.S1_at--180--7911Chr11:17437712..17437736 (25 bp)
GGTTCGCGAGTAATATCCGGCTTAG
LOC_Os11g30790
Os.52356.1.S1_at--1054--551Chr11:17437726..17437750 (25 bp)
ATCCGGCTTAGCAGTCGATTGTCTA
LOC_Os11g30790
Os.52356.1.S1_at--1149--5611Chr11:17437818..17437842 (25 bp)
GACAGGCGGCATGCTTATGGATTAC
NONE
Os.52356.1.S1_at--414--10111Chr11:17437833..17437857 (25 bp)
TATGGATTACGCGTGCTAGCTGCTA
NONE
Os.52356.1.S1_at--1073--4851Chr11:17437847..17437871 (25 bp)
GCTAGCTGCTAGATCGATTCATCTT
NONE
Os.52356.1.S1_at--72--6571Chr11:17437862..17437886 (25 bp)
GATTCATCTTCCGTTTGCCAAATTA
NONE
Os.52356.1.S1_at--310--1551Chr11:17437890..17437914 (25 bp)
AGCATTGCCGTTGCATTCGTGGCGA
NONE
Os.52356.1.S1_at--773--8811Chr11:17437962..17437986 (25 bp)
TGTTGAATCAGAGCCATGCCATGGG
NONE
Os.52356.1.S1_at--86--7251Chr11:17438035..17438059 (25 bp)
GTCCCTATTGGGATTTGCTATACAT
NONE
Os.52356.1.S1_at--911--371Chr11:17438058..17438082 (25 bp)
ATCACCAGCGTGTTCTTTTCTGTAA
NONE
Os.52356.1.S1_at--530--10531Chr11:17438163..17438187 (25 bp)
TTCAGTTCTGTATTCTTCTTTTCCC
NONE
Target Sequence 
GGTTCGCGAGTAATATCCGGCTTAGCAGTCGATTGTCTAGTCTTGTGGAAGATGCACAGGACGAACTTGTTCGTCAACAA
GAAGTTACCGTACAAGTGGAGTGATGGACAGGCGGCATGCTTATGGATTACGCGTGCTAGCTGCTAGATCGATTCATCTT
CCGTTTGCCAAATTAATCAGCATTGCCGTTGCATTCGTGGCGAACGCACCAGCAAACCAACAACCTAGTAGTATTGTTTT
CTTTTGTATATGTTGAATCAGAGCCATGCCATGGGCAGCCCTGTAGCCGTCCAAACAGCCCGAGCAAACATATTGTTATT
TTAGTCCCTATTGGGATTTGCTATACATCACCAGCGTGTTCTTTTCTGTAAGTCGGATTGGGATCAGGTGCAGTCACTAT
AGTGACTTCAACTTTGGATCCAACCATCTAGCTGATAACGAACGTGCAGGATTCAGTTCTGTATTCTTCTTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis