Browse Element(s) Details


Os.52147.1.S1_at

Description gb:AK065205.1
DB_XREF= gi:32975223
TID=Os.52147.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002F11, full insert sequence.
FL= gb:AK065205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3076011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30720OsAffx.7362.1.S1_x_at1/1111+17387828..17389077hypothetical protein
LOC_Os11g30730Os.46314.3.S1_at3/1111+17389905..17391698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30740OsAffx.24844.1.S1_at1/1111+17393963..17397516transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30740OsAffx.23366.2.S1_s_at1/1111+17393963..17397516transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30750OsAffx.31232.1.S1_at11/1111+17399895..17400239hypothetical protein
LOC_Os11g30750OsAffx.29246.1.S1_x_at1/1111+17399895..17400239hypothetical protein
LOC_Os11g30760Os.52147.1.S1_at11/1111+17408324..17409291expressed protein
LOC_Os11g30770OsAffx.19092.1.S1_at11/1111+17424020..17424454hypothetical protein
LOC_Os11g30780NANA11+17430176..17430932hypothetical protein
LOC_Os11g30790Os.52356.1.S1_at2/1111+17431614..17437815expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52147.1.S1_at--944--9351Chr11:17408875..17408899 (25 bp)
TCGACGACTGCTCCTGAAAAACCAA
LOC_Os11g30760
Os.52147.1.S1_at--910--2391Chr11:17408891..17408915 (25 bp)
AAAAACCAACCATCATCGATCGTCC
LOC_Os11g30760
Os.52147.1.S1_at--1110--6391Chr11:17408908..17408932 (25 bp)
GATCGTCCACTGATTGATTCTCTGA
LOC_Os11g30760
Os.52147.1.S1_at--658--9351Chr11:17408933..17408957 (25 bp)
TCGAGATTCAAGAACAACCGGTGAT
LOC_Os11g30760
Os.52147.1.S1_at--806--2291Chr11:17408958..17408982 (25 bp)
AAATGTGTTTATTAGCAGCGTGTAG
LOC_Os11g30760
Os.52147.1.S1_at--405--1111Chr11:17409030..17409054 (25 bp)
AGTGTTCTTGGGTATTTGCTGGCTT
LOC_Os11g30760
Os.52147.1.S1_at--827--4711Chr11:17409047..17409071 (25 bp)
GCTGGCTTGCTGCTAATGGCATCAA
LOC_Os11g30760
Os.52147.1.S1_at--659--5352Chr11:17409173..17409197 (25 bp)
GAAGATCAAGTGTCTCAGTTTCAGG
LOC_Os11g30760
Os.52147.1.S1_at--970--8711Chr11:17409183..17409207 (25 bp)
TGTCTCAGTTTCAGGTGACGGGAAT
LOC_Os11g30760
Os.52147.1.S1_at--528--6611Chr11:17409218..17409242 (25 bp)
GTTGGTTGTTTGCTTCCCAGTAAAG
LOC_Os11g30760
Os.52147.1.S1_at--411--8571Chr11:17409262..17409286 (25 bp)
TGGATTAATTTAACCCCTGTGTTCA
LOC_Os11g30760
Target Sequence 
TCGACGACTGCTCCTGAAAAACCAACCATCATCGATCGTCCACTGATTGATTCTCTGATCGAGATTCAAGAACAACCGGT
GATAAATGTGTTTATTAGCAGCGTGTAGTGACAGTGAATTAAGGAGTAATTAGTAGTAGTATTTACTTAGTTGAGAGTGT
TCTTGGGTATTTGCTGGCTTGCTGCTAATGGCATCAATGGCATGAATGATCATTGGGCATTGGCATGTGCTGAAGAACAC
AAATCGGATTCAGAAAAAAAAAGTGAAAGGTGGATGAGGCTTTTTTGTTTTTAGCTGAGAAGATCAAGTGTCTCAGTTTC
AGGTGACGGGAATGTATGGTTTGGTTGGTTGTTTGCTTCCCAGTAAAGGAGCTTAGTGGCTAAGTCTTGGATTAATTTAA
CCCCTGTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis