Browse Element(s) Details


OsAffx.31232.1.S1_at

Description tigr:9639.m02783
TID=OsAffx.31232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3075011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30700NANA11+17376700..17381509retrotransposon protein, putative, unclassified
LOC_Os11g30720OsAffx.7362.1.S1_x_at1/1111+17387828..17389077hypothetical protein
LOC_Os11g30730Os.46314.3.S1_at3/1111+17389905..17391698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30740OsAffx.24844.1.S1_at1/1111+17393963..17397516transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30740OsAffx.23366.2.S1_s_at1/1111+17393963..17397516transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30750OsAffx.31232.1.S1_at11/1111+17399895..17400239hypothetical protein
LOC_Os11g30750OsAffx.29246.1.S1_x_at1/1111+17399895..17400239hypothetical protein
LOC_Os11g30760Os.52147.1.S1_at11/1111+17408324..17409291expressed protein
LOC_Os11g30770OsAffx.19092.1.S1_at11/1111+17424020..17424454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31232.1.S1_at--763--6171Chr11:17400131..17400155 (25 bp)
GAGGAGAACGCGACAATCCTTACCA
LOC_Os11g30750
OsAffx.31232.1.S1_at--274--5971Chr11:17400128..17400152 (25 bp)
GAGAACGCGACAATCCTTACCAACA
LOC_Os11g30750
OsAffx.31232.1.S1_at--1016--2571Chr11:17400125..17400149 (25 bp)
AACGCGACAATCCTTACCAACACTT
LOC_Os11g30750
OsAffx.31232.1.S1_at--102--2472Chr11:17400107..17400131 (25 bp)
AACACTTACGCGGCGACGAACGACG
LOC_Os11g30750
OsAffx.31232.1.S1_at--289--4711Chr11:17400098..17400122 (25 bp)
GCGGCGACGAACGACGAAGGAGATG
LOC_Os11g30750
OsAffx.31232.1.S1_at--275--1871Chr11:17400066..17400090 (25 bp)
ACGAGCTCCGCAGGGTGGCGAGATA
LOC_Os11g30750
OsAffx.31232.1.S1_at--176--6031Chr11:17400047..17400071 (25 bp)
GAGATACTGGTCAACAACGACAGCA
LOC_Os11g30750
OsAffx.31232.1.S1_at--1127--2451Chr11:17400035..17400059 (25 bp)
AACAACGACAGCAGCGTTCCGGCGT
LOC_Os11g30750
OsAffx.31232.1.S1_at--245--5651Chr11:17400029..17400053 (25 bp)
GACAGCAGCGTTCCGGCGTTCTTTG
LOC_Os11g30750
OsAffx.31232.1.S1_at--962--1291Chr11:17399995..17400019 (25 bp)
AGATGGTGGACGTTTTTCTCCTCGC
LOC_Os11g30750
OsAffx.31232.1.S1_at--949--7511Chr11:17399990..17400014 (25 bp)
GTGGACGTTTTTCTCCTCGCAGCTG
LOC_Os11g30750
Target Sequence 
GAGGAGAACGCGACAATCCTTACCAACACTTACGCGGCGACGAACGACGAAGGAGATGGCCGACGACGAGCTCCGCAGGG
TGGCGAGATACTGGTCAACAACGACAGCAGCGTTCCGGCGTTCTTTGGCGAAGACGAGATGGTGGACGTTTTTCTCCTCG
CAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis