Browse Element(s) Details


Os.52310.1.S1_at

Description gb:AK066301.1
DB_XREF= gi:32976319
TID=Os.52310.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059M20, full insert sequence.
FL= gb:AK066301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5190011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52310.1.S1_at--32--4431Chr02:31782007..31782031 (25 bp)
GCCATGCTGCCGGAAGAGTTCGTCA
LOC_Os02g51900
Os.52310.1.S1_at--649--8591Chr02:31781950..31781974 (25 bp)
TGGTGCCCGCAAGAGCAAGTCCTGG
LOC_Os02g51900
Os.52310.1.S1_at--872--2851Chr02:31781934..31781958 (25 bp)
AAGTCCTGGAGCATCCGGCGACCGG
LOC_Os02g51900
Os.52310.1.S1_at--771--3871Chr02:31781908..31781932 (25 bp)
CTGTTCTTGACGCATTCCGGCTGGA
LOC_Os02g51900
Os.52310.1.S1_at--683--1291Chr02:31781820..31781844 (25 bp)
AGATGACCAACTGCCGCTACGCTTG
LOC_Os02g51900
Os.52310.1.S1_at--739--4851Chr02:31781805..31781829 (25 bp)
GCTACGCTTGCACCAAGTGGGACAT
LOC_Os02g51900
Os.52310.1.S1_at--254--3651Chr02:31781634..31781658 (25 bp)
CTTCGAGCGCCGGAATAGATCGTTT
LOC_Os02g51900
Os.52310.1.S1_at--1146--10591Chr02:31781601..31781625 (25 bp)
TTCTGCTTGCAAGAGGTGATCACGC
LOC_Os02g51900
Os.52310.1.S1_at--125--7411Chr02:31781586..31781610 (25 bp)
GTGATCACGCAAGCTGAATATTGTT
LOC_Os02g51900
Os.52310.1.S1_at--1131--3051Chr02:31781517..31781541 (25 bp)
AATCTATGATGTGACCATCTCCCAC
LOC_Os02g51900
Os.52310.1.S1_at--614--4331Chr02:31781503..31781527 (25 bp)
CCATCTCCCACTATCTTGTTAGAAA
LOC_Os02g51900
Target Sequence 
GCCATGCTGCCGGAAGAGTTCGTCAGCGAGACCAAAGAGAGAGGGATCTTTCTGAGCTGGTGCCCGCAAGAGCAAGTCCT
GGAGCATCCGGCGACCGGCCTGTTCTTGACGCATTCCGGCTGGAACTCGACGCTGGAGAGCATAAGCGCCGGCGTGCCGA
TGATCTGCTGGCCGTTCTTCGCCGAGCAGATGACCAACTGCCGCTACGCTTGCACCAAGTGGGACATTGGACTGGAAATT
GACACCGACGTGAAGAGGGAGGAGGTGGCACGGCTCGTGCAAGAGGCCATGGATGGAGAGAAAAGCAAGGATATGAGAGC
GAAAGCAATGGCGTGGAAGGAGAAAGCCGTGGCGGCAACGGAGGAAGGAGGCACTTCGAGCGCCGGAATAGATCGTTTGG
TTGAATTTCTGCTTGCAAGAGGTGATCACGCAAGCTGAATATTGTTGTTGTTGATCAATCCTAAAAATGCGATTTGTAAT
TGGGTAAATGAATCTATGATGTGACCATCTCCCACTATCTTGTTAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis