Browse Element(s) Details


Os.52432.1.S1_at

Description gb:AK067092.1
DB_XREF= gi:32977110
TID=Os.52432.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096C01, full insert sequence.
FL= gb:AK067092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0486010/11DTW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04820NANA12+2059349..2061642hypothetical protein
LOC_Os12g04830Os.46715.1.S1_x_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04830Os.46715.1.S1_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04830OsAffx.22947.2.S1_x_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04840NANA12+2078325..2083611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04850NANA12+2085426..2085609hypothetical protein
LOC_Os12g04860Os.52432.1.S1_at10/1112+2086516..2089629DTW domain containing protein, expressed
LOC_Os12g04864NANA12+2089476..2089657NA
LOC_Os12g04870OsAffx.19498.1.S1_at11/1112+2090556..2091092hypothetical protein
LOC_Os12g04880Os.51897.1.S1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.26788.1.S1_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.6588.1.A1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04890OsAffx.29313.1.S1_at1/1112+2100030..2101631hypothetical protein
LOC_Os12g04900Os.27691.1.S1_x_at1/1112+2106317..2107273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04910Os.27691.1.S1_x_at1/1112+2107523..2112084retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52432.1.S1_at--694--6531Chr12:2087081..2087105 (25 bp)
GATTTCTGTAAACTTGTTCTTCGGT
LOC_Os12g04860
Os.52432.1.S1_at--866--4631Chr12:2087042..2087066 (25 bp)
GCGTAGGTTGATATTGCCTCCATGA
LOC_Os12g04860
Os.52432.1.S1_at--336--4471Chr12:2087027..2087051 (25 bp)
GCCTCCATGATTATCCCAATTCTTT
LOC_Os12g04860
Os.52432.1.S1_at--904--10251Chr12:2086909..2086933 (25 bp)
TTTGTTGCTTACTGAGTGTGCTCCT
LOC_Os12g04860
Os.52432.1.S1_at--750--10592Chr12:2086872..2086896 (25 bp)
TTGCAACTTATGTGACCTTGACCTT
LOC_Os12g04860
Os.52432.1.S1_at--832--7351Chr12:2086861..2086885 (25 bp)
GTGACCTTGACCTTTTGTAGTGATC
LOC_Os12g04860
Os.52432.1.S1_at--50--6791Chr12:2086615..2086639 (25 bp)
GTTAGATTTCCAAACAGTACTCTGT
LOC_Os12g04860
Os.52432.1.S1_at--1111--1171Chr12:2086600..2086624 (25 bp)
AGTACTCTGTTGTAATGTTCTCTTG
LOC_Os12g04860
Os.52432.1.S1_at--795--6272Chr12:2086572..2086596 (25 bp)
GATGTAATGCTTTTCTGCCACTATA
LOC_Os12g04860
Os.52432.1.S1_at--430--9491Chr12:2086559..2086583 (25 bp)
TCTGCCACTATATGAGTTCTGCCTT
LOC_Os12g04860
Os.52432.1.S1_at--941--9512Chr12:2086516..2086540 (25 bp)
TCTAAAATTTCTTGCGAGGTGACCC
NONE
Target Sequence 
GATTTCTGTAAACTTGTTCTTCGGTTACAAGAAACAAATGCGTAGGTTGATATTGCCTCCATGATTATCCCAATTCTTTA
TTTGTTTGATTATGAACAAAATGCCGTGGAGTGCAGATTTTTGTTTGAAGTGCAGGACATTCATAACAGTGTACTAGTGG
CATGACATTTGGTTTGTTGCTTACTGAGTGTGCTCCTTCCTTTTTTATTTTGCAACTTATGTGACCTTGACCTTTTGTAG
TGATCAAGAGAAGGAGAGGGCAGGAGATGCTTTAAGTGTTTCTTGAGCAATTTGTGCAACAGGTATTGGGAACTGTTCTT
GAGTTTTGCTTTTGCATGCAAGTTGGAGATGATATTTCTTCGACAGAAATATGAGGCGGTTGAAGATGGATTTCTAAGCA
GAATGTGGGTTGAATGCAGTTTACTGATGTCAGATTGTTTTGGAGCTGTACCTATGATTTTACTGGGTTAGATTTCCAAA
CAGTACTCTGTTGTAATGTTCTCTTGTTTGATGTAATGCTTTTCTGCCACTATATGAGTTCTGCCTTAGTGAAAACTAGG
CACAATCTAAAATTTCTTGCGAGGTGACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis