Browse Element(s) Details


Os.52435.1.S1_at

Description gb:AK067110.1
DB_XREF= gi:32977128
TID=Os.52435.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095I12, full insert sequence.
FL= gb:AK067110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2979010/11EXS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29770OsAffx.15669.1.S1_at10/116+17103032..17104994hypothetical protein
LOC_Os06g29780OsAffx.4964.1.S1_at10/116+17106336..17107478hypothetical protein
LOC_Os06g29790Os.52435.1.S1_at10/116+17129112..17133976EXS family protein, expressed
LOC_Os06g29800OsAffx.27869.1.S1_at11/116+17141221..17143445pentatricopeptide, putative, expressed
LOC_Os06g29804Os.6050.1.S1_a_at11/116+17155143..17158846expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52435.1.S1_at--241--4191Chr06:17133211..17133235 (25 bp)
CCCTTGGCTCCGTAATGATCTGATA
LOC_Os06g29790
Os.52435.1.S1_at--695--1171Chr06:17133246..17133269 (24 bp)
AGTACATCTATTTCCTTTCCATGGG
LOC_Os06g29790
Os.52435.1.S1_at--886--3851NONE
CTGAACATTATCTTGAGGCTGGCAT
NONE
Os.52435.1.S1_at--341--911Chr06:17133381..17133405 (25 bp)
AGGCTGGCATGGCTTCAGACCGTCA
LOC_Os06g29790
Os.52435.1.S1_at--601--1171Chr06:17133437..17133461 (25 bp)
AGTAACTTTGTTCATCTTGGCAGCT
LOC_Os06g29790
Os.52435.1.S1_at--1116--10851Chr06:17133453..17133477 (25 bp)
TTGGCAGCTCTTGAGGTGATTCGAC
LOC_Os06g29790
Os.52435.1.S1_at--1039--6211Chr06:17133478..17133501 (24 bp)
GAGGCCACTGGAACTTCTACAGGTT
LOC_Os06g29790
Os.52435.1.S1_at--509--8671Chr06:17133617..17133641 (25 bp)
TGTGAAGGTTGTTCCACTTCCTTTT
LOC_Os06g29790
Os.52435.1.S1_at--349--731Chr06:17133743..17133767 (25 bp)
ATGTTAGAAAGCCTGCACTACCCTA
LOC_Os06g29790
Os.52435.1.S1_at--27--4291Chr06:17133754..17133778 (25 bp)
CCTGCACTACCCTATTATGATTCAA
LOC_Os06g29790
Os.52435.1.S1_at--1--3091Chr06:17133952..17133976 (25 bp)
AATCACAATTGTTCTTTTGGCCACT
LOC_Os06g29790
Target Sequence 
CCCTTGGCTCCGTAATGATCTGATACTCAAACAAAAGTACATCTATTTCCTTTCCATGGGTCTGAACATTATCTTGAGGC
TGGCATGGCTTCAGACCGTCATCCACCCTAACATCGGAAGCCTGGATTCCAGAGTAACTTTGTTCATCTTGGCAGCTCTT
GAGGTGATTCGACGAGGCCACTGGAACTTCTACAGGTTGGAAAACGAGCACCTAAACAATGCAGGGAAATTCAGAGCTGT
GAAGGTTGTTCCACTTCCTTTTCATGAAGTGGAAGAGGACTAACAAAATAGGGCATCATCATCATCATTGCAGCAGATTC
TAGGGATTCAGAACTCTAAGCAGTTCAGATGTAACACCAACTAATGTTAGAAAGCCTGCACTACCCTATTATGATTCAAT
TAAATTTTTTGGTGTGAGGAATAATGGGCATTTAACATGTTCAGTTTGGAGAAGATACAAGCAAAAGGCAAACACTATAT
AGATGTAGAATACAGGGGTTCCAATTAGTTTACCAAGATCGAATACTAATCTCGTGGAGTTGAAGCGAATTCACTTGTGG
AAAAATCCAATCAATCACAATTGTTCTTTTGGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis