Browse Element(s) Details


Os.52512.1.S1_at

Description gb:AK067593.1
DB_XREF= gi:32977611
TID=Os.52512.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108J24, full insert sequence.
FL= gb:AK067593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g392903/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39260Os.19618.1.S1_at11/111+22409139..22415086ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39270Os.16736.1.S1_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.16736.1.S1_s_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.40799.1.S1_at10/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39280Os.36435.2.S1_x_at11/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.1.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.2.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39290Os.52512.1.S1_at3/111+22425382..22426396Harpin-induced protein 1 containing protein, expressed
LOC_Os01g39310Os.10934.1.S1_at11/111+22447167..22455562Root hair defective 3 GTP-binding protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52512.1.S1_at--27--2471NONE
AACACCACCGTCATCAAGGTGCGAC
NONE
Os.52512.1.S1_at--1080--4211Chr01:22425787..22425811 (25 bp)
CCGCTGGTGGCGAACGGCCTCAGAT
LOC_Os01g39290
Os.52512.1.S1_at--593--9651Chr01:22425768..22425792 (25 bp)
TCAGATCCAGGAAGTCGCACGCCAT
LOC_Os01g39290
Os.52512.1.S1_at--753--2851Chr01:22425757..22425781 (25 bp)
AAGTCGCACGCCATGTCGGTGGAGA
LOC_Os01g39290
Os.52512.1.S1_at--97--2911NONE
AAGGTTGGGTTCCTGATCGTCCGCT
NONE
Os.52512.1.S1_at--769--3711NONE
CTGATCGTCCGCTTCAAGTCCAAGC
NONE
Os.52512.1.S1_at--949--2831NONE
AAGTCCAAGCGTATCAACGTCCGCG
NONE
Os.52512.1.S1_at--1035--10551NONE
TTCTTCCTCTTCGAGCACGACGGAC
NONE
Os.52512.1.S1_at--867--3651NONE
CTTCTTCCTTCTTCTACATGTTTTA
NONE
Os.52512.1.S1_at--772--10551NONE
TTCTTCTACATGTTTTATTCCTCTC
NONE
Os.52512.1.S1_at--1083--451NONE
ATCTCTCTCTCAACAGTGATATGTG
NONE
Target Sequence 
AACACCACCGTCATCAAGGTGCGACGCCTCCGCCGCCGCCGCCACCGTGGACCCGCTGGTGGCGAACGGCCTCAGATCCA
GGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGATCGTCCGCTTCAAGTCCAAGCGTATCAAC
GTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCGCCAAGAACACCCCTTCCGCTCCACCGATCGTCGTCGCCGCCGC
CCCGTCGCCGGTGAGGTCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTC
AAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTACATGTTTTATTCCTC
TCTCAATTTCACAACATATATATCTCTCTCTCAACAGTGATATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis