Browse Element(s) Details


Os.52516.1.S1_x_at

Description gb:AK067613.1
DB_XREF= gi:32977631
TID=Os.52516.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112F20, full insert sequence.
FL= gb:AK067613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g442709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44210OsAffx.2955.1.S1_at11/112+26754041..26754565hypothetical protein
LOC_Os02g44220Os.5452.1.A1_s_at11/112+26756776..26760516Pex19 protein family protein, expressed
LOC_Os02g44230Os.6092.1.S1_at11/112+26761738..26765754trehalose-phosphatase family protein, expressed
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52516.1.S1_x_at--416--251Chr02:26781571..26781595 (25 bp)
ATATCATTTTCTGTCAGTGGCCACC
LOC_Os02g44270
Os.52516.1.S1_x_at--447--1091Chr02:26781586..26781610 (25 bp)
AGTGGCCACCTGCTAATTTGTTCGG
LOC_Os02g44270
Os.52516.1.S1_x_at--218--8791Chr02:26781604..26781628 (25 bp)
TGTTCGGCGTTTCATGCTGGATAAA
LOC_Os02g44270
Os.52516.1.S1_x_at--671--771NONE
ATGTGTCTTACTATCTCTCTAGGTC
NONE
Os.52516.1.S1_x_at--636--3451Chr02:26781750..26781774 (25 bp)
CAGTACTTCTTGTTGCTGTAGCTTG
LOC_Os02g44270
Os.52516.1.S1_x_at--14--791Chr02:26781815..26781839 (25 bp)
ATGTGCTCTCTTACCTTCAGGATTA
LOC_Os02g44270
Os.52516.1.S1_x_at--968--2451Chr02:26781840..26781864 (25 bp)
AACAAGTGACTGCTTCCTTCATTGC
LOC_Os02g44270
Os.52516.1.S1_x_at--1079--5851Chr02:26781890..26781914 (25 bp)
GAGCCTATGATTCTGTGAGTCGTCT
LOC_Os02g44270
Os.52516.1.S1_x_at--790--1151Chr02:26781907..26781931 (25 bp)
AGTCGTCTTCTCTGCATAGTATTAT
LOC_Os02g44270
Os.52516.1.S1_x_at--253--2191Chr02:26781986..26782010 (25 bp)
ACACAGGTTCCTGCATCAAGACAAC
LOC_Os02g44270
Os.52516.1.S1_x_at--392--311Chr02:26782101..26782125 (25 bp)
ATACCTGTACATTCATATTTACGAG
NONE
Target Sequence 
ATATCATTTTCTGTCAGTGGCCACCTGCTAATTTGTTCGGCGTTTCATGCTGGATAAAAGAAGTGCACATCAAGAAGAGG
AGTAACTATAACCATGTGATGGACCGAATGAACTTATGATACATCATGTGTCTTACTATCTCTCTAGGTCAGAAATACTA
GGACAACCCAGATGAGGAACAGTACTTCTTGTTGCTGTAGCTTGGACTTAAAAGGCCAGTCATGTGCTGAACTGCAGATA
CTTGATGTGCTCTCTTACCTTCAGGATTAAACAAGTGACTGCTTCCTTCATTGCAGTTGGGTTTTATTTCCAGTTTAATG
AGCCTATGATTCTGTGAGTCGTCTTCTCTGCATAGTATTATAAACAGAAGAATAGAAGCTAGCATCTGCTGCTTGCTGGA
AGTAAAATATTGCTAACACAGGTTCCTGCATCAAGACAACAGTGGTGGAGGTGGGGGACCTTTGGAGCAGGAGTTTAGGA
CCGACGCATGGCCCCTCCTTGTGCATGCATCATTGTACATATATGTACGTATACCTGTACATTCATATTTACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52516.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis