Browse Element(s) Details


Os.52551.1.S1_at

Description gb:AK067918.1
DB_XREF= gi:32977936
TID=Os.52551.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122D07, full insert sequence.
FL= gb:AK067918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g422106/11Protease Do-like 5, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42190Os.19899.1.S1_x_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190Os.19899.2.S1_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190OsAffx.31549.2.S1_x_at1/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42200NANA12+26139379..26145397cation/hydrogen exchanger, putative, expressed
LOC_Os12g42210Os.52551.1.S1_at6/1112+26146557..26151053Protease Do-like 5, chloroplast precursor, putative, expressed
LOC_Os12g42220Os.52955.1.A1_at11/1112+26160950..26162375expressed protein
LOC_Os12g42230Os.15571.1.S1_at10/1112+26166584..26169873Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
LOC_Os12g42240OsAffx.20087.1.S1_at11/1112+26170159..26170515hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0030163biological_processprotein catabolism
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52551.1.S1_at--830--3791Chr12:26148213..26148237 (25 bp)
CTCCCAATGGGAGGCCGATTCGTGG
LOC_Os12g42210
Os.52551.1.S1_at--395--3151Chr12:26149573..26149898 (25 bp)
AATTCTGGTAACTCAGGTGGCCCAC
LOC_Os12g42210
Os.52551.1.S1_at--267--7731Chr12:26149889..26149913 (25 bp)
GGTGGCCCACTAATTGACTCATATG
LOC_Os12g42210
Os.52551.1.S1_at--726--9831Chr12:26150945..26150966 (22 bp)
TAAAGGAACTGGGATCTCCTCCGGG
LOC_Os12g42210
Os.52551.1.S1_at--954--91Chr12:26150979..26151003 (25 bp)
ATTCCCATCGACACTGTTGTACAGT
LOC_Os12g42210
Os.52551.1.S1_at--18--9651Chr12:26151003..26151027 (25 bp)
TCAGTCCCTAACCTCATTGTGTATG
LOC_Os12g42210
Os.52551.1.S1_at--534--231Chr12:26151122..26151146 (25 bp)
ATATATACTTCTGCTGCTACTCGGA
NONE
Os.52551.1.S1_at--551--4851Chr12:26151137..26151161 (25 bp)
GCTACTCGGATCAGTGCATTCAAAA
NONE
Os.52551.1.S1_at--529--8131Chr12:26151270..26151294 (25 bp)
GGACATGCTCTGGTAATTCCTCTGT
NONE
Os.52551.1.S1_at--357--91Chr12:26151285..26151309 (25 bp)
ATTCCTCTGTTGCTGAACTGATCCA
NONE
Os.52551.1.S1_at--95--10291Chr12:26151324..26151348 (25 bp)
TTTGCTGCTGAATGCTGGCTTCAAG
NONE
Target Sequence 
CTCCCAATGGGAGGCCGATTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACTAATT
GACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTT
CGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGTGTATGGAACATCTGTGAGCAATAGGTTTTGAT
TCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTG
CTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAAC
GAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGT
TGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis