Browse Element(s) Details


Os.15571.1.S1_at

Description gb:AK063753.1
DB_XREF= gi:32973771
TID=Os.15571.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A03, full insert sequence.
FL= gb:AK063753.1 gb:AK101464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4223010/11Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42200NANA12+26139379..26145397cation/hydrogen exchanger, putative, expressed
LOC_Os12g42210Os.52551.1.S1_at6/1112+26146557..26151053Protease Do-like 5, chloroplast precursor, putative, expressed
LOC_Os12g42220Os.52955.1.A1_at11/1112+26160950..26162375expressed protein
LOC_Os12g42230Os.15571.1.S1_at10/1112+26166584..26169873Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
LOC_Os12g42240OsAffx.20087.1.S1_at11/1112+26170159..26170515hypothetical protein
LOC_Os12g42250OsAffx.7862.1.S1_s_at11/1112+26177205..26178290expressed protein
LOC_Os12g42260Os.47335.2.S1_at10/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42260Os.47335.1.S1_at9/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42270Os.35344.18.S1_x_at11/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270Os.35344.3.S1_x_at9/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270OsAffx.22940.5.S1_x_at3/1112+26189112..26195160transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0010240cellular_componentpyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0004802molecular_functiontransketolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15571.1.S1_at--629--5551Chr12:26169389..26169413 (25 bp)
GAAACCATTCGATCTGCACACGATA
LOC_Os12g42230
Os.15571.1.S1_at--737--4271Chr12:26169488..26169512 (25 bp)
CCTGAGGTCGGCCATCATTGATAAC
LOC_Os12g42230
Os.15571.1.S1_at--329--371Chr12:26169551..26169575 (25 bp)
ATCACAGGATGTACCGACGCCATAT
LOC_Os12g42230
Os.15571.1.S1_at--213--5811Chr12:26169566..26169590 (25 bp)
GACGCCATATGCTGCAACTCTGGAG
LOC_Os12g42230
Os.15571.1.S1_at--1053--7891Chr12:26169689..26169713 (25 bp)
GGATTCAGAACCACTGTCCTTTGTT
LOC_Os12g42230
Os.15571.1.S1_at--433--3671Chr12:26169707..26169731 (25 bp)
CTTTGTTCGTCTTGTCACGTAGTGA
LOC_Os12g42230
Os.15571.1.S1_at--1083--7371Chr12:26169728..26169752 (25 bp)
GTGACCTCCATTGTGGCGTAGACAC
LOC_Os12g42230
Os.15571.1.S1_at--616--1411Chr12:26169747..26169771 (25 bp)
AGACACTGTATTCTATTTCCCCAAC
LOC_Os12g42230
Os.15571.1.S1_at--439--2331Chr12:26169775..26169799 (25 bp)
AAAGTTATACCCTTACCCATGCATT
LOC_Os12g42230
Os.15571.1.S1_at--1099--631Chr12:26169793..26169817 (25 bp)
ATGCATTATTGGTCTCTCTGTTCTT
LOC_Os12g42230
Os.15571.1.S1_at--307--8611NONE
TGGTGCTCCATTTTACGTTCTGTAC
NONE
Target Sequence 
GAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGNATGCGAA
CGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTG
TCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGC
TGTCGAGCAGATCTGCCAATAATTCAANTCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCT
TTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTT
ACCCATGCATTATTGGTCTCTCTGTTCTTCCTGCTACATTTGGTGCTCCATTTTACGTTCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis