Browse Element(s) Details


OsAffx.7862.1.S1_s_at

Description tigr:9640.m04150
TID=OsAffx.7862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4225011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42220Os.52955.1.A1_at11/1112+26160950..26162375expressed protein
LOC_Os12g42230Os.15571.1.S1_at10/1112+26166584..26169873Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
LOC_Os12g42240OsAffx.20087.1.S1_at11/1112+26170159..26170515hypothetical protein
LOC_Os12g42250OsAffx.7862.1.S1_s_at11/1112+26177205..26178290expressed protein
LOC_Os12g42260Os.47335.2.S1_at10/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42260Os.47335.1.S1_at9/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42270Os.35344.18.S1_x_at11/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270Os.35344.3.S1_x_at9/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270OsAffx.22940.5.S1_x_at3/1112+26189112..26195160transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7862.1.S1_s_at--81--1731Chr12:26177704..26177728 (25 bp)
ACCAGATGTCCTCCATGGCGTTGCA
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--412--6651Chr12:26177504..26177528 (25 bp)
GTTGATCTCAACCTGAAGCTCTAGC
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--914--4891Chr12:26177474..26177498 (25 bp)
GCTTAAGTTGTTGCTCATCATGCTG
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--703--9091Chr12:26177463..26177487 (25 bp)
TGCTCATCATGCTGATCTGTGCTGA
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--937--471Chr12:26177449..26177473 (25 bp)
ATCTGTGCTGAGACGATGATCGAGG
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--390--8851Chr12:26177433..26177457 (25 bp)
TGATCGAGGTAGGTGCTGTGCTTTT
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--400--10611Chr12:26177347..26177371 (25 bp)
TTCGTCGTCTTCCTTTGAGAGCTAG
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--93--8911Chr12:26177332..26177356 (25 bp)
TGAGAGCTAGTGTGCGTAGTGCCAC
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--170--10071Chr12:26177316..26177340 (25 bp)
TAGTGCCACGCAAGTATTTTCTACT
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--755--10491Chr12:26177280..26177304 (25 bp)
TTAAGAATAAATCCGTGGCCATTGT
LOC_Os12g42250
OsAffx.7862.1.S1_s_at--238--9751Chr12:26177247..26177271 (25 bp)
TAATTATGCTGTTGCCTTGATCAAA
LOC_Os12g42250
Target Sequence 
ACCAGATGTCCTCCATGGCGTTGCACTCCTGCCGGCCTCACCAGGGCTCCCATGTCACCGCCGCCGACATCGCCACGCTG
GCTGCGCCGCCACATTACACCGTCGACCATGGCGTTGCCGGCATCGCCAGCGGCGGTGGTGACAGCTCGGTGGGGTGGCG
CCAAAGGCAAAGGGAGGCCGGCGGCGAGAAGCAGAGGCAGGTTGATCTCAACCTGAAGCTCTAGCTAGTAGCTTAAGTTG
TTGCTCATCATGCTGATCTGTGCTGAGACGATGATCGAGGTAGGTGCTGTGCTTTTGGTTTGTTTCTTCAGAGATTCTTC
TTTCTTTTCTTTCCTTTCTTTCCTTGGTTATTTCTTCTTCGTCGTCTTCCTTTGAGAGCTAGTGTGCGTAGTGCCACGCA
AGTATTTTCTACTGGGGTGTACAATTAAGAATAAATCCGTGGCCATTGTAAATTAATTAATTATGCTGTTGCCTTGATCA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7862.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis