Browse Element(s) Details


Os.47335.2.S1_at

Description gb:AK101044.1
DB_XREF= gi:32986253
TID=Os.47335.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033004K16, full insert sequence.
FL= gb:AK101044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4226010/11Initiation factor 2 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42220Os.52955.1.A1_at11/1112+26160950..26162375expressed protein
LOC_Os12g42230Os.15571.1.S1_at10/1112+26166584..26169873Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
LOC_Os12g42240OsAffx.20087.1.S1_at11/1112+26170159..26170515hypothetical protein
LOC_Os12g42250OsAffx.7862.1.S1_s_at11/1112+26177205..26178290expressed protein
LOC_Os12g42260Os.47335.2.S1_at10/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42260Os.47335.1.S1_at9/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42270Os.35344.18.S1_x_at11/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270Os.35344.3.S1_x_at9/1112+26189112..26195160transposon protein, putative, Mutator sub-class
LOC_Os12g42270OsAffx.22940.5.S1_x_at3/1112+26189112..26195160transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47335.2.S1_at--453--9791Chr12:26181728..26181752 (25 bp)
TAAGCCTGCTAATGCTACTGCCTAT
LOC_Os12g42260
Os.47335.2.S1_at--447--1991Chr12:26181712..26181736 (25 bp)
ACTGCCTATTTTTCAGCTAGCTCAG
LOC_Os12g42260
Os.47335.2.S1_at--1080--6671Chr12:26181669..26181693 (25 bp)
GTTGCTGCCTATATTTATGCTGATC
LOC_Os12g42260
Os.47335.2.S1_at--845--6611Chr12:26181509..26181533 (25 bp)
GTTGGCTTGCTCAGACAGGATCTTC
LOC_Os12g42260
Os.47335.2.S1_at--840--6811Chr12:26181440..26181464 (25 bp)
GTTTTTCACCGGCTTGCACATATAT
LOC_Os12g42260
Os.47335.2.S1_at--40--3311Chr12:26181424..26181448 (25 bp)
CACATATATTAATCTCCCACGCTTG
LOC_Os12g42260
Os.47335.2.S1_at--137--3351Chr12:26181407..26181431 (25 bp)
CACGCTTGTCCAGTTGGGCAACTAT
LOC_Os12g42260
Os.47335.2.S1_at--811--7811Chr12:26181368..26181392 (25 bp)
GGTCATATTGGTGTCCATGTCTGCC
LOC_Os12g42260
Os.47335.2.S1_at--1060--2911Chr12:26181328..26181352 (25 bp)
AAGGACTGCCACAGTTCTGTTCCTG
LOC_Os12g42260
Os.47335.2.S1_at--246--8311NONE
GGCTGCTACGACAGGCCTTGTTTAG
NONE
Os.47335.2.S1_at--114--111Chr12:26180442..26180466 (25 bp)
ATTCGTCGCCTGATAGCTGTAAATC
LOC_Os12g42260
Target Sequence 
TAAGCCTGCTAATGCTACTGCCTATTTTTCAGCTAGCTCAGACCTGCCCCAACATTGTTGTTGCTGCCTATATTTATGCT
GATCAAGACCTGTTTACAGCGACGGTCCCTGGCAAGGCACCAGTTGATCAACTGTCTGAAAACGTGATGGCAGATTGAAT
TGCTCAGCGTAAGAGTGCAGTAGGTACTGTAGCAGGTCTGGGTTGTGTTTTGGCTTGGTGTTGGCTTGCTCAGACAGGAT
CTTCAGCTGTATCAGCATGAATAGACGACGACATGATTGTTTTGGGGAGTTTTTCACCGGCTTGCACATATATTAATCTC
CCACGCTTGTCCAGTTGGGCAACTATCATTGTCAATTCAAGGTCATATTGGTGTCCATGTCTGCCAAAGTTCTTGGGTAC
AAGGACTGCCACAGTTCTGTTCCTGGCTGCTACGACAGGCCTTGTTTAGTGGAGAAATTGTGGATCAATTCGTCGCCTGA
TAGCTGTAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47335.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis