Browse Element(s) Details


Os.52598.1.S1_at

Description gb:AK068262.1
DB_XREF= gi:32978280
TID=Os.52598.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149M23, full insert sequence.
FL= gb:AK068262.1 gb:AK105668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0734011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed
LOC_Os07g07320Os.13016.1.S1_a_at11/117+3660674..3661707Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os07g07329NANA7+3662263..3662611NA
LOC_Os07g07340Os.52598.1.S1_at11/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07340OsAffx.25749.1.S1_s_at2/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52598.1.S1_at--771--10611Chr07:3669995..3670019 (25 bp)
TTCGGCTCGTCGTGCAACGGCATGG
LOC_Os07g07340
Os.52598.1.S1_at--427--991Chr07:3670080..3670104 (25 bp)
AGGAGGCTTGCAATTTCCAGGGCCT
LOC_Os07g07340
Os.52598.1.S1_at--21--3371Chr07:3670132..3670156 (25 bp)
CACCGCGCAATGCAACTTCACAATA
LOC_Os07g07340
Os.52598.1.S1_at--344--3171Chr07:3670152..3670176 (25 bp)
CAATACAGATCAAGTCGTCGGCGGC
LOC_Os07g07340
Os.52598.1.S1_at--824--1591Chr07:3670230..3670254 (25 bp)
AGCTCCTGCTTCTGTGGTAGCATTG
LOC_Os07g07340
Os.52598.1.S1_at--1017--4871Chr07:3670281..3670305 (25 bp)
GCATTCTTTGGAGATTTTACCCTTT
LOC_Os07g07340
Os.52598.1.S1_at--1002--9951Chr07:3670298..3670322 (25 bp)
TACCCTTTGGATTAGAAGCCTGTGA
LOC_Os07g07340
Os.52598.1.S1_at--343--6271Chr07:3670321..3670345 (25 bp)
GATGTGATTCAGGTGCTTTTTATTT
LOC_Os07g07340
Os.52598.1.S1_at--752--10371Chr07:3670440..3670464 (25 bp)
TTTTTTGCTCATATCCGTCCAATGT
LOC_Os07g07340
Os.52598.1.S1_at--338--9291Chr07:3670453..3670477 (25 bp)
TCCGTCCAATGTCCAATGTCGATTA
LOC_Os07g07340
Os.52598.1.S1_at--418--2391Chr07:3670513..3670537 (25 bp)
AAACTACGCTTTATTCTCTCAAAAT
LOC_Os07g07340
Target Sequence 
TTCGGCTCGTCGTGCAACGGCATGGACACCAATGGCAACGCGTCCTACGCCTTCAACGCCTACTTCCAGGCGCAGAGCCA
GAAGGAGGAGGCTTGCAATTTCCAGGGCCTCGCCGTGCCCACCGAGACCGACCCCACCACCGCGCAATGCAACTTCACAA
TACAGATCAAGTCGTCGGCGGCGGCGGCGGCGGCGGCGCCGGTGGCCGCCGGCGTGGTCGTGGCGGCGCTGGCACAGCTC
CTGCTTCTGTGGTAGCATTGAGATCAGTGTGCATTGTTGATTTGTTGCATTCTTTGGAGATTTTACCCTTTGGATTAGAA
GCCTGTGATGTGATTCAGGTGCTTTTTATTTGAAGAAATAGAGGAGGTGGTTAATTTGTTGTGTAATTAGTTGATTTGAG
TACAGTTTATCTGATGACATTAGCTTAAATTGGTGCTTTGTTTTTTTTTTTGCTCATATCCGTCCAATGTCCAATGTCGA
TTATCTAATATTCAGAAAGTTCATCTGACAGGGGAAAAAAACTACGCTTTATTCTCTCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis