Browse Element(s) Details


Os.52600.1.S1_at

Description gb:AK068264.1
DB_XREF= gi:32978282
TID=Os.52600.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149P15, full insert sequence.
FL= gb:AK068264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2719011/11Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g2734010/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27130NANA4+15845197..15847989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27140NANA4+15851563..15853448retrotransposon protein, putative, unclassified
LOC_Os04g27150NANA4+15857239..15858626expressed protein
LOC_Os04g27160OsAffx.1300.1.S1_at2/114+15859977..15861221hypothetical protein
LOC_Os04g27160OsAffx.9532.1.S1_x_at1/114+15859977..15861221hypothetical protein
LOC_Os04g27170NANA4+15861934..15863222retrotransposon protein, putative, unclassified
LOC_Os04g27180OsAffx.7693.1.S1_x_at1/114+15866053..15866316hypothetical protein
LOC_Os04g27190Os.52600.1.S1_at11/114+15870565..15880857Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27190Os.27794.1.S1_at11/114+15870565..15880857Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27200NANA4+15884515..15884889hypothetical protein
LOC_Os04g27210NANA4+15893468..15896923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g27220NANA4+15897965..15901159transposon protein, putative, unclassified
LOC_Os04g27230NANA4+15901799..15907954retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52600.1.S1_at--113--4731Chr04:15872904..15872928 (25 bp)
GCTGGTCAATAAGATCCTGCTATAT
LOC_Os04g27190
Os.52600.1.S1_at--253--8332Chr04:15966193..15966217 (25 bp)
GGCTGCTATTATCATGCTTTAATGT
LOC_Os04g27340
Os.52600.1.S1_at--543--8212Chr04:15966119..15966143 (25 bp)
GGAATTATCTGCCATATCAATCTAG
LOC_Os04g27340
Os.52600.1.S1_at--624--5112Chr04:15966084..15966108 (25 bp)
GCACAATTAACCCATAGCTTATACT
LOC_Os04g27340
Os.52600.1.S1_at--373--3052Chr04:15966058..15966082 (25 bp)
AATCTAATCGTATTCCAGCGGGCTT
LOC_Os04g27340
Os.52600.1.S1_at--530--232Chr04:15966023..15966047 (25 bp)
ATATATCCTTCACTGACACACGAAC
LOC_Os04g27340
Os.52600.1.S1_at--193--5612Chr04:15966009..15966033 (25 bp)
GACACACGAACTACATATCCTTAAC
LOC_Os04g27340
Os.52600.1.S1_at--83--8132Chr04:15965979..15966003 (25 bp)
GGACAGGGACTGAAGATACACGCAA
LOC_Os04g27340
Os.52600.1.S1_at--325--5292Chr04:15965867..15965891 (25 bp)
GAAGGCCATGGCTTTTTTCTACAAT
LOC_Os04g27340
Os.52600.1.S1_at--205--10132Chr04:15965835..15965859 (25 bp)
TATGAAGTCACAACCTCTCAGCATT
LOC_Os04g27340
Os.52600.1.S1_at--207--3752Chr04:15965819..15965843 (25 bp)
CTCAGCATTCAAGCACCTTACTTAA
LOC_Os04g27340
Target Sequence 
GCTGGTCAATAAGATCCTGCTATATGCTTAAAAAGTTGTGGTTACTGAGGATACTACAAACAGCATAATATTGAATACAT
GTAAGTAACTGTCAGTCTAAGAATTCCAAGGATATAAATAACTGATTAATCATATGGCTGCTATTATCATGCTTTAATGT
TCTATACTATTTATGAAATTCATATATTATTTAGCCCAATAGCTTAAATGGAATTATCTGCCATATCAATCTAGCTAGCA
GGAAGCACAATTAACCCATAGCTTATACTTAATCTAATCGTATTCCAGCGGGCTTTGCACAAAATATATATCCTTCACTG
ACACACGAACTACATATCCTTAACAAGATGGACAGGGACTGAAGATACACGCAAAATAATGAACTAGCTAGAGACTTTAA
GTGTATACATCGATCTAAATATGTTGTTTTTTAATCATAACAATATTAGAAGAAACCAAGGGAAGGCCATGGCTTTTTTC
TACAATAGGAAACTATGAAGTCACAACCTCTCAGCATTCAAGCACCTTACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis