Browse Element(s) Details


Os.52601.1.S1_at

Description gb:AK103221.1
DB_XREF= gi:32988430
TID=Os.52601.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122P06, full insert sequence.
FL= gb:AK068269.1 gb:AK103221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4607011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46030OsAffx.10496.1.S1_at1/1111+27353868..27356775retrotransposon protein, putative, unclassified
LOC_Os11g46040OsAffx.1646.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46040OsAffx.22722.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46050NANA11+27363866..27364828hypothetical protein
LOC_Os11g46060OsAffx.7424.1.S1_at11/1111+27375667..27376113hypothetical protein
LOC_Os11g46070Os.52601.1.S1_at11/1111+27377785..27384128NB-ARC domain containing protein, expressed
LOC_Os11g46080Os.54361.1.S1_at11/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46080OsAffx.5663.1.S1_at1/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative
LOC_Os11g46110NANA11+27403569..27403918hypothetical protein
LOC_Os11g46120Os.49932.1.S1_at10/1111+27404717..27407585expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52601.1.S1_at--466--1111Chr11:27383448..27383472 (25 bp)
AGTGAGCATCCCAATATGATCGTGC
LOC_Os11g46070
Os.52601.1.S1_at--407--711Chr11:27383463..27383487 (25 bp)
ATGATCGTGCTTTCTCAAAATGGTG
LOC_Os11g46070
Os.52601.1.S1_at--1041--7751Chr11:27383484..27383508 (25 bp)
GGTGAGCATGAGATTTTCCCACAAA
LOC_Os11g46070
Os.52601.1.S1_at--734--3011Chr11:27383508..27383532 (25 bp)
AATGCTGTTTCTCGAAATGGCGAAC
LOC_Os11g46070
Os.52601.1.S1_at--550--811Chr11:27383524..27383548 (25 bp)
ATGGCGAACTCGAGATTGTCCCGGT
LOC_Os11g46070
Os.52601.1.S1_at--302--7251Chr11:27383541..27383565 (25 bp)
GTCCCGGTCAATGCTGTTGATGGCA
LOC_Os11g46070
Os.52601.1.S1_at--896--31Chr11:27383604..27383628 (25 bp)
ATTGTCATTGTTAACGCCCTATCTG
LOC_Os11g46070
Os.52601.1.S1_at--967--10151Chr11:27383623..27383647 (25 bp)
TATCTGACTGCATTCTACTGCCGTT
LOC_Os11g46070
Os.52601.1.S1_at--1127--8111Chr11:27383760..27383784 (25 bp)
GGACTGGTATATTAACTTGCATCGT
LOC_Os11g46070
Os.52601.1.S1_at--853--8571Chr11:27383996..27384020 (25 bp)
TGGTTTCTCTAAAGTTCCGCATGTA
LOC_Os11g46070
Os.52601.1.S1_at--1139--7451Chr11:27384047..27384071 (25 bp)
GTGTCCCTGTTCACATTGATATCTA
LOC_Os11g46070
Target Sequence 
AGTGAGCATCCCAATATGATCGTGCTTTCTCAAAATGGTGAGCATGAGATTTTCCCACAAAATGCTGTTTCTCGAAATGG
CGAACTCGAGATTGTCCCGGTCAATGCTGTTGATGGCATGCATCAGGATTAGCACAGGCAAAAATTGAAGAACAATATTG
TCATTGTTAACGCCCTATCTGACTGCATTCTACTGCCGTTGTTCTCTGNNNGTGGGNTTATAAGGACTGGTATATTAACT
TGCATCGTACAAACGGNCAAATTAATCCTCATTCTNGNTGCCAGACATAGNTTGTGGNAGCAGACGGGNCAAATCANGAT
CCTATTGGAATTACAATCCTTCTATGACTCANGCCAACCAAATCAATCAAGATAGAAGCCAAATTAAGTTGAAAAATATT
TGCTAGGGATTGCAATTCGCAGCAGTGAGGAGCGCAAGTAACAATCAGGTAGTACTTTGATAATTTGGTTTCTCTAAAGT
TCCGCATGTATTAGTATGTATTGAATTGGAATTAATGTGTCCCTGTTCACATTGATATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis