Browse Element(s) Details


Os.52614.1.S1_at

Description gb:AK068324.1
DB_XREF= gi:32978342
TID=Os.52614.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151J01, full insert sequence.
FL= gb:AK068324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1294011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed
LOC_Os03g12920NANA3+6945583..6946134hypothetical protein
LOC_Os03g12930OsAffx.25078.1.S1_s_at11/113+6953876..6957221expressed protein
LOC_Os03g12930OsAffx.25078.1.S1_at11/113+6953876..6957221expressed protein
LOC_Os03g12930Os.54564.1.S1_at10/113+6953876..6957221expressed protein
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52614.1.S1_at--74--8071Chr03:6967439..6967463 (25 bp)
GGAGCAGCCTGGAAGGTTTCTAACA
LOC_Os03g12940
Os.52614.1.S1_at--952--1071Chr03:6967411..6967435 (25 bp)
AGGGCCAGAAGAGGCCCAGTCCTTT
LOC_Os03g12940
Os.52614.1.S1_at--608--7831Chr03:6967370..6967394 (25 bp)
GGTAATCCTTATAGTCCACATGGCT
LOC_Os03g12940
Os.52614.1.S1_at--826--1131Chr03:6967358..6967382 (25 bp)
AGTCCACATGGCTTTCCGGTGATTG
LOC_Os03g12940
Os.52614.1.S1_at--584--7931Chr03:6967329..6967353 (25 bp)
GGATTCAGACATGCTCCCGTTTATC
LOC_Os03g12940
Os.52614.1.S1_at--909--9231Chr03:6967291..6967315 (25 bp)
TCCTTGGGCGCAGCTTTGGAAATCA
LOC_Os03g12940
Os.52614.1.S1_at--583--8151Chr03:6967274..6967298 (25 bp)
GGAAATCAGCGCAGGAACATCTCAC
LOC_Os03g12940
Os.52614.1.S1_at--552--5491Chr03:6967260..6967284 (25 bp)
GAACATCTCACCCAGCTGCAGTTTT
LOC_Os03g12940
Os.52614.1.S1_at--691--9211Chr03:6967224..6967248 (25 bp)
TCGCAACTTTCTTGGTTAAGTCATT
LOC_Os03g12940
Os.52614.1.S1_at--1117--7011Chr03:6967140..6967164 (25 bp)
GTACATATTTTATAGTTGGCACTTT
LOC_Os03g12940
Os.52614.1.S1_at--370--6431Chr03:6967014..6967037 (24 bp)
GATCATGGTAAAGTATCGTCTGTTT
LOC_Os03g12940
Target Sequence 
GGAGCAGCCTGGAAGGTTTCTAACAATAAGGGCCAGAAGAGGCCCAGTCCTTTTTTTAACTATGGCTGGGGTAATCCTTA
TAGTCCACATGGCTTTCCGGTGATTGGTGGGGATTCAGACATGCTCCCGTTTATCGGGCATCCCAATCTCCTTGGGCGCA
GCTTTGGAAATCAGCGCAGGAACATCTCACCCAGCTGCAGTTTTNGGTGGACACCATCGCAACTTTCTTGGTTAAGTCAT
TTNCNTGGGTTTTGCTAGTATGTTAAGAATATTTCATCTGAAAAGCTACATATAACATANTTGTACATATTTTATAGTTG
GCACTTTATGCATGNTCAGTTGNTAACTGTATTACTGNACTCGNAATCNTTTCTTTNCTTTGNTGATATANCCTATATTT
TCTTGTANNANCAGNGTTATGCATGCNTGGATCATGGTAAAGTATCGTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis