Browse Element(s) Details


Os.52641.1.S1_at

Description gb:AK068476.1
DB_XREF= gi:32978494
TID=Os.52641.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151O19, full insert sequence.
FL= gb:AK068476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3048611/11Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30482Os.39431.1.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.9332.2.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.39431.1.S1_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482OsAffx.22452.1.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.9332.2.S1_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30486Os.52641.1.S1_at11/119+18610293..18611307Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os09g30490Os.27569.1.S2_at11/119+18617051..18617800EF hand family protein, expressed
LOC_Os09g30494Os.27691.1.S1_x_at5/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494OsAffx.19532.1.S1_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494Os.27691.2.S1_x_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30498NANA9+18633082..18634910hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52641.1.S1_at--773--2171Chr09:18611084..18611108 (25 bp)
ACACGTTCCTCAACTACCTGGAGAA
LOC_Os09g30486
Os.52641.1.S1_at--776--1891Chr09:18611054..18611078 (25 bp)
ACGTCATCGAGACGTTCCAGAGCCA
LOC_Os09g30486
Os.52641.1.S1_at--921--5891Chr09:18610860..18610884 (25 bp)
GAGCTCAACCCGGTGAACACGTTCG
LOC_Os09g30486
Os.52641.1.S1_at--92--471Chr09:18610791..18610815 (25 bp)
ATCTCCGTGCAGTCGATGTGGTCCA
LOC_Os09g30486
Os.52641.1.S1_at--1145--7491Chr09:18610774..18610798 (25 bp)
GTGGTCCAGGCCCAAGATCTCGAGC
LOC_Os09g30486
Os.52641.1.S1_at--502--2811Chr09:18610761..18610785 (25 bp)
AAGATCTCGAGCAGCGTGTACGCCA
LOC_Os09g30486
Os.52641.1.S1_at--778--9951Chr09:18610719..18610743 (25 bp)
TACGCGCTCAACAAGGTGCTCCTGC
LOC_Os09g30486
Os.52641.1.S1_at--274--7211Chr09:18610533..18610557 (25 bp)
GTCGTCAATGGCTTGGTGATGGCAT
LOC_Os09g30486
Os.52641.1.S1_at--250--8591Chr09:18610504..18610528 (25 bp)
TGGTAGCTTGATGCTCCTGTGGTGA
LOC_Os09g30486
Os.52641.1.S1_at--1076--6331Chr09:18610495..18610519 (25 bp)
GATGCTCCTGTGGTGATGATCAGAG
LOC_Os09g30486
Os.52641.1.S1_at--161--6071Chr09:18610455..18610479 (25 bp)
GAGTTCTTGGAGTCAAATTTGCAAC
LOC_Os09g30486
Target Sequence 
ACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTC
ACCATCTTCGTCCCNAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAA
GACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGA
ACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGG
CCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGAT
CTTCAGCAAGGACCCGCCGNNGGCGNCNNNGCNNNCNCNNNNNNCGNNGNNNGNGGCGTCNGNNCNGGCGTCGTCAATGG
CTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGT
CAAATTTGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis