Browse Element(s) Details


Os.52661.1.S1_at

Description gb:AK068628.1
DB_XREF= gi:32978645
TID=Os.52661.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153G06, full insert sequence.
FL= gb:AK068628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g446809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44640NANA11+26483928..26485496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44650OsAffx.31476.1.S1_at11/1111+26492947..26494218hypothetical protein
LOC_Os11g44660OsAffx.19373.1.S1_at11/1111+26500722..26502889Protein kinase domain containing protein, expressed
LOC_Os11g44670NANA11+26504424..26507680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44680Os.52661.1.S1_at9/1111+26508551..26514533expressed protein
LOC_Os11g44690OsAffx.31477.1.S1_at11/1111+26517623..26520782Protein kinase domain containing protein, expressed
LOC_Os11g44700OsAffx.7414.1.S1_at9/1111+26523038..26527248expressed protein
LOC_Os11g44710Os.47999.3.A1_at6/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.3.A1_x_at5/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.45173.1.S1_x_at3/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.2.A1_x_at2/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710OsAffx.20733.1.A1_x_at1/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52661.1.S1_at--701--3031Chr11:26513222..26513246 (25 bp)
AATCCTCCAGATTTGCATGTTACAT
LOC_Os11g44680
Os.52661.1.S1_at--863--4451Chr11:26513370..26513394 (25 bp)
GCCTCAAGCATTTCCTAACAACAAT
LOC_Os11g44680
Os.52661.1.S1_at--107--8151Chr11:26513404..26513428 (25 bp)
GGACAACACTTTTTACATGGCTTTC
LOC_Os11g44680
Os.52661.1.S1_at--166--8311NONE
GGCTTTCAAGGTGATCTGACTCAGA
NONE
Os.52661.1.S1_at--1125--6231Chr11:26513527..26513551 (25 bp)
GATGGACCATGACTATGCGCAATTT
LOC_Os11g44680
Os.52661.1.S1_at--1059--8231NONE
GGCACCTGAAGGTACCTCTTATGGA
NONE
Os.52661.1.S1_at--528--8091Chr11:26514188..26514212 (25 bp)
GGACCAGCAAATGTACCGCAGAATG
LOC_Os11g44680
Os.52661.1.S1_at--644--31Chr11:26514215..26514239 (25 bp)
ATTGGTGACGGCTCTATGGACATGT
LOC_Os11g44680
Os.52661.1.S1_at--698--6791Chr11:26514246..26514270 (25 bp)
GTTATGCATACATCTTTCCGGACAA
LOC_Os11g44680
Os.52661.1.S1_at--103--8911Chr11:26514283..26514307 (25 bp)
TGAGAGGCCTCATAGCTCTGCATAT
LOC_Os11g44680
Os.52661.1.S1_at--10--5311Chr11:26514325..26514349 (25 bp)
GAAGGCTTTGTTGCCAGCTAGTAAT
LOC_Os11g44680
Target Sequence 
AATCCTCCAGATTTGCATGTTACATTTCAAGTTCAGGGTATTGCAGGAGCTGAGATTTATCATGCACATGAACTGCCTCA
AGCATTTCCTAACAACAATAATGATTTTGGACAACACTTTTTACATGGCTTTCAAGGTGATCTGACTCAGATGGACCATG
ACTATGCGCAATTTGGCATTGCTGATATGCAGTGTTATACTACACAGGCACCTGAAGGTACCTCTTATGGAGGCAACAAC
ATGATCGGACCAGCAAATGTACCGCAGAATGTTATTGGTGACGGCTCTATGGACATGTTTGACTGTTATGCATACATCTT
TCCGGACAATGAGAACCAGAATGAGAGGCCTCATAGCTCTGCATATCCAGGACCAGTTTAACTGAAGGCTTTGTTGCCAG
CTAGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis