Browse Element(s) Details


Os.52688.1.S1_at

Description gb:AK068761.1
DB_XREF= gi:32978786
TID=Os.52688.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013163P22, full insert sequence.
FL= gb:AK068761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4429011/11PAP2 superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52688.1.S1_at--458--9611Chr02:26792597..26792720 (25 bp)
TCATCATCGATCTCAGTGTTGTCAT
LOC_Os02g44290
Os.52688.1.S1_at--731--5671Chr02:26792729..26792753 (25 bp)
GACATTATGGTCTATGGGCCTGAAA
LOC_Os02g44290
Os.52688.1.S1_at--202--3471Chr02:26792926..26792950 (25 bp)
CAGTGGCCCCATTGCTGGATGAAAT
LOC_Os02g44290
Os.52688.1.S1_at--1062--8491Chr02:26792952..26792976 (25 bp)
TGGAATACTTGGCTGCACGACCTGG
LOC_Os02g44290
Os.52688.1.S1_at--541--3231Chr02:26792984..26793008 (25 bp)
CAAGATGCGAGTGTGCCTGCTGTCC
LOC_Os02g44290
Os.52688.1.S1_at--475--251Chr02:26793015..26793039 (25 bp)
ATATCCTGGTGTTGCTGGACCGTGA
LOC_Os02g44290
Os.52688.1.S1_at--461--2491Chr02:26793119..26793143 (25 bp)
AACAGTGACCTATCGTTGCTTAGCT
LOC_Os02g44290
Os.52688.1.S1_at--697--9271Chr02:26793155..26793179 (25 bp)
TCCTGAATGCTTATCTGGTTATCTG
LOC_Os02g44290
Os.52688.1.S1_at--503--10431Chr02:26793173..26793197 (25 bp)
TTATCTGGCAGCTCATAGCCTCATA
LOC_Os02g44290
Os.52688.1.S1_at--898--10591Chr02:26793226..26793250 (25 bp)
TTCTGTCTGAAATGGCGGTTCTCTT
LOC_Os02g44290
Os.52688.1.S1_at--505--7891Chr02:26793242..26793266 (25 bp)
GGTTCTCTTGCCCTTTGAATTTCAA
LOC_Os02g44290
Target Sequence 
TCATCATCGATCTCAGTGTTGTCATGGATAGTAGACATTATGGTCTATGGGCCTGAAACTGAGAGATCATACAGAAAGCA
ATCAATAATCAATACTACCAGGACATAGACTGTATTACTGACAACAATACTGGATGAGAAAACAAAGGAGCCAGTGGCCC
CATTGCTGGATGAAATTTGGAATACTTGGCTGCACGACCTGGGAGAATGCAAGATGCGAGTGTGCCTGCTGTCCCTGTTC
ATATCCTGGTGTTGCTGGACCGTGACACATCGATGACAAAAGTGGGAGATGGAATAGCAAAAGCTGAAAAGAAGGTTGTT
TCTTGCGTGGAAGCTTTGGATCTGAACAGTGACCTATCGTTGCTTAGCTCCAAATAAATATCCTGAATGCTTATCTGGTT
ATCTGGCAGCTCATAGCCTCATAAGCGCTAGTAGAGTAAAAGGCTTCTGTTTTCTGTCTGAAATGGCGGTTCTCTTGCCC
TTTGAATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis