Browse Element(s) Details


Os.52734.1.S1_at

Description gb:AK068981.1
DB_XREF= gi:32979005
TID=Os.52734.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003L10, full insert sequence.
FL= gb:AK068981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1708011/11Extracellular signal-regulated kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein
LOC_Os11g17070Os.55080.1.S1_at4/1111+9441855..9442396hypothetical protein
LOC_Os11g17080Os.52734.1.S1_at11/1111+9449489..9457254Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os11g17090OsAffx.18892.1.S1_at10/1111+9457588..9459448hypothetical protein
LOC_Os11g17100NANA11+9473355..9473696transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52734.1.S1_at--428--2451Chr11:9456679..9456703 (25 bp)
AACAAACTACCTGCTACTGTTGATG
LOC_Os11g17080
Os.52734.1.S1_at--370--8091Chr11:9456707..9456731 (25 bp)
GGAGCGCCCACTGGTAGGCAACAAG
LOC_Os11g17080
Os.52734.1.S1_at--624--3911Chr11:9456788..9456812 (25 bp)
CGGCGCGGATTACCATTTCTAAGTT
LOC_Os11g17080
Os.52734.1.S1_at--1045--251Chr11:9456922..9456946 (25 bp)
ATATCCTGCGTGATAGGCTGCTAGT
LOC_Os11g17080
Os.52734.1.S1_at--880--4811Chr11:9456941..9456965 (25 bp)
GCTAGTTTCCGTTCTTTTTGGATCG
LOC_Os11g17080
Os.52734.1.S1_at--1096--5391Chr11:9456987..9457011 (25 bp)
GAAGCTTACACGGTATCTACTACAG
LOC_Os11g17080
Os.52734.1.S1_at--227--6551Chr11:9457029..9457053 (25 bp)
GATTACAACTTCTGACTTGACTCTG
LOC_Os11g17080
Os.52734.1.S1_at--337--5691Chr11:9457042..9457066 (25 bp)
GACTTGACTCTGTAGTTCATCACTT
LOC_Os11g17080
Os.52734.1.S1_at--496--7371Chr11:9457081..9457105 (25 bp)
GTGACTTCACATCGTCTGATTGTTG
LOC_Os11g17080
Os.52734.1.S1_at--820--5411Chr11:9457124..9457148 (25 bp)
GAAGCCCTGGAGTATCTTGGAATGC
LOC_Os11g17080
Os.52734.1.S1_at--444--1391Chr11:9457197..9457221 (25 bp)
AGACTTTTCAACACTATTAGCTGGG
LOC_Os11g17080
Target Sequence 
AACAAACTACCTGCTACTGTTGATGGCCGGAGCGCCCACTGGTAGGCAACAAGGTATGTGTGCGCAAATGAAACAGCAAA
TCCTTTGCCTTACCAAGGTTCCGAGGCATCGGCGCGGATTACCATTTCTAAGTTGTTACATGCTGACACATTCAAAGATA
CTATTCTGTACAGAGTTGTATTAATTACAGATCTTGGTATGCTCTAGAAGACTGAAGACTAAAGTACTATAGAAATATAT
TTCATATCCTGCGTGATAGGCTGCTAGTTTCCGTTCTTTTTGGATCGGTTGCAAAAATACCCACAGCAGAAGCTTACACG
GTATCTACTACAGTTCATGGTATACGCATAGATTACAACTTCTGACTTGACTCTGTAGTTCATCACTTTGTTCTTAAAGC
TGGTGACTTCACATCGTCTGATTGTTGATTAAACGTGGAAGTTTTGAAGCCCTGGAGTATCTTGGAATGCTTCTAGTAAG
CTGTCATTCAAATGTAATATTTAACTATATCATTTTGTAGACTTTTCAACACTATTAGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis