Browse Element(s) Details


OsAffx.7129.1.S1_at

Description tigr:9639.m01560
TID=OsAffx.7129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1706011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17014OsAffx.18890.1.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17014Os.53348.2.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17030OsAffx.18891.1.S1_at11/1111+9416048..9416443hypothetical protein
LOC_Os11g17040OsAffx.31013.1.S1_at11/1111+9418202..9418555hypothetical protein
LOC_Os11g17049NANA11+9423126..9423886NA
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein
LOC_Os11g17070Os.55080.1.S1_at4/1111+9441855..9442396hypothetical protein
LOC_Os11g17080Os.52734.1.S1_at11/1111+9449489..9457254Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os11g17090OsAffx.18892.1.S1_at10/1111+9457588..9459448hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7129.1.S1_at--1039--1431Chr11:9433358..9433714 (25 bp)
AGAACGAACCGCGAGATCACAGCCA
LOC_Os11g17060
OsAffx.7129.1.S1_at--174--5452Chr06:8518581..8518600 (20 bp)
GAACCGCGAGATCACAGCCAATGTA
NONE
OsAffx.7129.1.S1_at--1118--6031Chr11:9433346..9433370 (25 bp)
GAGATCACAGCCAATGTAAACCGGA
LOC_Os11g17060
OsAffx.7129.1.S1_at--443--1691Chr11:9433338..9433362 (25 bp)
AGCCAATGTAAACCGGAATGCCCTT
LOC_Os11g17060
OsAffx.7129.1.S1_at--272--7031Chr11:9433331..9433355 (25 bp)
GTAAACCGGAATGCCCTTGGAGCTT
LOC_Os11g17060
OsAffx.7129.1.S1_at--875--1771Chr11:9433327..9433351 (25 bp)
ACCGGAATGCCCTTGGAGCTTTGGA
LOC_Os11g17060
OsAffx.7129.1.S1_at--294--5271Chr11:9433323..9433347 (25 bp)
GAATGCCCTTGGAGCTTTGGACAGA
LOC_Os11g17060
OsAffx.7129.1.S1_at--351--9172Chr06:8518611..8518633 (22 bp)
TGCCCTTGGAGCTTTGGACAGAGAT
NONE
OsAffx.7129.1.S1_at--745--8072Chr06:8518616..8518640 (25 bp)
GGAGCTTTGGACAGAGATTATCATC
NONE
OsAffx.7129.1.S1_at--248--6051Chr11:9433300..9433324 (25 bp)
GAGATTATCATCGATCAAGCCCTTA
LOC_Os11g17060
OsAffx.7129.1.S1_at--227--411Chr11:9433294..9433318 (25 bp)
ATCATCGATCAAGCCCTTAATTAAT
LOC_Os11g17060
Target Sequence 
AGAACGAACCGCGAGATCACAGCCAATGTAAACCGGAATGCCCTTGGAGCTTTGGACAGAGATTATCATCGATCAAGCCC
TTAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis