Browse Element(s) Details


Os.53348.2.S1_at

Description gb:AK110480.1
DB_XREF= gi:32995689
TID=Os.53348.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A04, full insert sequence.
FL= gb:AK110480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1701411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16940Os.46306.1.S1_x_at1/1111+9379397..9379666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16950NANA11+9382753..9384277transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16960OsAffx.18888.1.S1_at10/1111+9386416..9387794enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g16970OsAffx.31010.1.S1_at11/1111+9388575..9389321expressed protein
LOC_Os11g16979NANA11+9393144..9394179NA
LOC_Os11g16990OsAffx.31011.1.S1_at11/1111+9395240..9395974hypothetical protein
LOC_Os11g17002NANA11+9400608..9400825NA
LOC_Os11g17014OsAffx.18890.1.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17014Os.53348.2.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17030OsAffx.18891.1.S1_at11/1111+9416048..9416443hypothetical protein
LOC_Os11g17040OsAffx.31013.1.S1_at11/1111+9418202..9418555hypothetical protein
LOC_Os11g17049NANA11+9423126..9423886NA
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53348.2.S1_at--339--10511Chr11:9409821..9409845 (25 bp)
TTCAACTGCCAAACTCCGTTGGTGA
LOC_Os11g17014
Os.53348.2.S1_at--446--3071Chr11:9409928..9409952 (25 bp)
AATCTTCAGTCTTTGGAGTTGCATG
LOC_Os11g17014
Os.53348.2.S1_at--912--6951Chr11:9409976..9410000 (25 bp)
GTAGCATTGGAACGTGCTCTCCAGA
LOC_Os11g17014
Os.53348.2.S1_at--941--2691Chr11:9410000..9410024 (25 bp)
AAGCTAGAGCTCCTTGGGCATTTGA
LOC_Os11g17014
Os.53348.2.S1_at--46--5091Chr11:9410063..9410087 (25 bp)
GCACCAAGCCTTCGCTATGTTGAGA
LOC_Os11g17014
Os.53348.2.S1_at--415--2251Chr11:9410131..9410155 (25 bp)
AAATACTTCCAACTACTCACCAGAA
LOC_Os11g17014
Os.53348.2.S1_at--815--7591Chr11:9410164..9410188 (25 bp)
GGGCATCTGTGAGTTGCGACCAAAC
LOC_Os11g17014
Os.53348.2.S1_at--140--4091Chr11:9410180..9410204 (25 bp)
CGACCAAACCTTACTGTGCTCAAAT
LOC_Os11g17014
Os.53348.2.S1_at--585--151Chr11:9410246..9410270 (25 bp)
ATTAGGCCCCACCTTACAGTATATG
LOC_Os11g17014
Os.53348.2.S1_at--301--5631Chr11:9410310..9410334 (25 bp)
GACACGCGTGGTTCAAATTTCATAT
LOC_Os11g17014
Os.53348.2.S1_at--781--8211Chr11:9410352..9410376 (25 bp)
GGAATATGGCTCAACAGGCTCACAA
LOC_Os11g17014
Target Sequence 
TTCAACTGCCAAACTCCGTTGGTGAACTGAATAACCTACAAACTCTACATGGTGTAAAACCTGCGGAAAATTGGGGTGGA
CTGACATGTCCATTGGACATGATGACCAATCTTCAGTCTTTGGAGTTGCATGGATTTAATGATGCCAACCATGGAGTAGC
ATTGGAACGTGCTCTCCAGAAGCTAGAGCTCCTTGGGCATTTGAAATTGACTGGGGACAAGATTCCATCATCTGTGTTCA
CTGCACCAAGCCTTCGCTATGTTGAGAGCTTAGTTCTTGATGGGGATATTAAATGGGCAGATAATTCTTCAAATACTTCC
AACTACTCACCAGAAGTTGCATTGGGCATCTGTGAGTTGCGACCAAACCTTACTGTGCTCAAATTGAATAGTGTCAGTAA
GGAGCTCGAGGAGTTCATAGAGAAAATTAGGCCCCACCTTACAGTATATGAATGTCCCACACGGACAGATGCTTAGAAAA
AATTCTGAAGACACGCGTGGTTCAAATTTCATATGTGTTACAAATCAACAAGGAATATGGCTCAACAGGCTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53348.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis