Browse Element(s) Details


OsAffx.18888.1.S1_at

Description tigr:9639.m01549
TID=OsAffx.18888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161539 carnitine racemase like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1696010/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16910OsAffx.18887.1.S1_at11/1111+9360571..9361527hypothetical protein
LOC_Os11g16920NANA11+9363409..9367464retrotransposon protein, putative, unclassified
LOC_Os11g16930OsAffx.12179.1.S1_at2/1111+9369774..9371977transposon protein, putative, unclassified
LOC_Os11g16930OsAffx.12179.1.S1_x_at1/1111+9369774..9371977transposon protein, putative, unclassified
LOC_Os11g16940Os.46306.1.S1_x_at1/1111+9379397..9379666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16950NANA11+9382753..9384277transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16960OsAffx.18888.1.S1_at10/1111+9386416..9387794enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g16970OsAffx.31010.1.S1_at11/1111+9388575..9389321expressed protein
LOC_Os11g16979NANA11+9393144..9394179NA
LOC_Os11g16990OsAffx.31011.1.S1_at11/1111+9395240..9395974hypothetical protein
LOC_Os11g17002NANA11+9400608..9400825NA
LOC_Os11g17014OsAffx.18890.1.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17014Os.53348.2.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008809molecular_functioncarnitine racemase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18888.1.S1_at--177--7491Chr11:9387533..9387557 (25 bp)
GTGGGCGAGGTGGTCCGGCTCCTGC
LOC_Os11g16960
OsAffx.18888.1.S1_at--130--4131Chr11:9387436..9387460 (25 bp)
CGCACGACCACTGCGTGGTGTGGGA
LOC_Os11g16960
OsAffx.18888.1.S1_at--175--5611Chr11:9387338..9387362 (25 bp)
GACAAGGTCGCCTACGCGCGGCTGC
LOC_Os11g16960
OsAffx.18888.1.S1_at--603--9411Chr11:9387268..9387292 (25 bp)
TCGTCGGCACGTGGTACTCGGCGAA
LOC_Os11g16960
OsAffx.18888.1.S1_at--913--8231Chr11:9387263..9387287 (25 bp)
GGCACGTGGTACTCGGCGAACGACC
LOC_Os11g16960
OsAffx.18888.1.S1_at--388--3631Chr11:9387202..9387226 (25 bp)
CTTGCGAGCTGCTCGAAGGGATCGA
LOC_Os11g16960
OsAffx.18888.1.S1_at--300--8251Chr11:9387173..9387197 (25 bp)
GGCAGCGGCAAGAACTACGCCACGG
LOC_Os11g16960
OsAffx.18888.1.S1_at--815--7191Chr11:9387113..9387137 (25 bp)
GTCGGGATGGAGATCACCCGGCCAC
LOC_Os11g16960
OsAffx.18888.1.S1_at--70--4711Chr11:9387087..9387111 (25 bp)
GCGGCCGTCGTCTCCTGAGCAAATT
LOC_Os11g16960
OsAffx.18888.1.S1_at--336--8911Chr11:9387076..9387096 (21 bp)
TGAGCAAATTCTCCACGTCAGTGAG
LOC_Os11g16960
OsAffx.18888.1.S1_at--163--3131NONE
AATTCTCCACGTCAGTGAGAAGGAA
NONE
Target Sequence 
GTGGGCGAGGTGGTCCGGCTCCTGCTCGAGATGCCGGCGCCCACCGCGGCCGCCGTGAACGGCGACGCGACGTCGCTGGG
CCTCGCGCTGGCGCTGGCGCACGACCACTGCGTGGTGTGGGAGGGCGCCGCGGTGGCGCTCCCGGAGGCCCGGCGCCGGC
GCCCACTCCCGGGCTACGTGGCGGCGCTGCTCCGCGACAAGGTCGCCTACGCGCGGCTGCGGAAGCTGCTGATGCTGAGG
GCGGAGGCGTGCACGGGGAAGGAGCTCGTCGGCACGTGGTACTCGGCGAACGACCCCGCCGCCGCCGACAGGGAGGTGGT
GGCGGCGGAGGCTTGCGAGCTGCTCGAAGGGATCGAGGTCGGCAGCGGCAAGAACTACGCCACGGCGAGGCAGGCGATGT
GGCCGGAAAGCTGCGCCGCCGTCGGGATGGAGATCACCCGGCCACGGCGGCCGTCGTCTCCTGAGCAAATTCTCCACGTC
AGTGAGAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis