Browse Element(s) Details


OsAffx.31013.1.S1_at

Description tigr:9639.m01558
TID=OsAffx.31013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16979NANA11+9393144..9394179NA
LOC_Os11g16990OsAffx.31011.1.S1_at11/1111+9395240..9395974hypothetical protein
LOC_Os11g17002NANA11+9400608..9400825NA
LOC_Os11g17014OsAffx.18890.1.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17014Os.53348.2.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17030OsAffx.18891.1.S1_at11/1111+9416048..9416443hypothetical protein
LOC_Os11g17040OsAffx.31013.1.S1_at11/1111+9418202..9418555hypothetical protein
LOC_Os11g17049NANA11+9423126..9423886NA
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein
LOC_Os11g17070Os.55080.1.S1_at4/1111+9441855..9442396hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31013.1.S1_at--334--9131Chr11:9418247..9418271 (25 bp)
TGCGGCTATAGCACCGTCCATGGGC
LOC_Os11g17040
OsAffx.31013.1.S1_at--682--291Chr11:9418254..9418278 (25 bp)
ATAGCACCGTCCATGGGCTCACTCA
LOC_Os11g17040
OsAffx.31013.1.S1_at--1097--4491Chr11:9418296..9418320 (25 bp)
GCCGTCGTCTCCTTGAGTTCATGAC
LOC_Os11g17040
OsAffx.31013.1.S1_at--381--7171Chr11:9418302..9418326 (25 bp)
GTCTCCTTGAGTTCATGACTCCAAA
LOC_Os11g17040
OsAffx.31013.1.S1_at--1145--6051Chr11:9418310..9418334 (25 bp)
GAGTTCATGACTCCAAACATCGGCT
LOC_Os11g17040
OsAffx.31013.1.S1_at--902--5711Chr11:9418318..9418342 (25 bp)
GACTCCAAACATCGGCTCCATAGAA
LOC_Os11g17040
OsAffx.31013.1.S1_at--265--2051Chr11:9418326..9418350 (25 bp)
ACATCGGCTCCATAGAAGAAGATTT
LOC_Os11g17040
OsAffx.31013.1.S1_at--853--2811Chr11:9418344..9418368 (25 bp)
AAGATTTGGCCGCTGCCAGAGAGGA
LOC_Os11g17040
OsAffx.31013.1.S1_at--571--8091Chr11:9418431..9418455 (25 bp)
GGAGCCCATGCGAGGCACATTCATT
LOC_Os11g17040
OsAffx.31013.1.S1_at--742--611Chr11:9418438..9418462 (25 bp)
ATGCGAGGCACATTCATTGGTCCTA
LOC_Os11g17040
OsAffx.31013.1.S1_at--58--6211Chr11:9418442..9418466 (25 bp)
GAGGCACATTCATTGGTCCTACTCC
LOC_Os11g17040
Target Sequence 
TGCGGCTATAGCACCGTCCATGGGCTCACTCAGGGGGCTCAATGCCGCCGCCGTCGTCTCCTTGAGTTCATGACTCCAAA
CATCGGCTCCATAGAAGAAGATTTGGCCGCTGCCAGAGAGGAGAGGAGGGGCTCCGGCCGAGGGATGAGAGGAAGGTGCG
GGTGGGAGGGCGAGCGGCAGTGCCGGAGCCCATGCGAGGCACATTCATTGGTCCTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis