Browse Element(s) Details


OsAffx.18892.1.S1_at

Description tigr:9639.m01564
TID=OsAffx.18892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1709010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein
LOC_Os11g17070Os.55080.1.S1_at4/1111+9441855..9442396hypothetical protein
LOC_Os11g17080Os.52734.1.S1_at11/1111+9449489..9457254Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os11g17090OsAffx.18892.1.S1_at10/1111+9457588..9459448hypothetical protein
LOC_Os11g17100NANA11+9473355..9473696transposon protein, putative, unclassified
LOC_Os11g17110OsAffx.31015.1.S1_at4/1111+9482935..9483804Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18892.1.S1_at--1083--10791Chr11:9459244..9459268 (25 bp)
TTGTCGATTCAGCTACCGGGATTTG
LOC_Os11g17090
OsAffx.18892.1.S1_at--720--9931Chr11:9458998..9459022 (25 bp)
TACGGGATCATGGTTGTTCGACAAA
LOC_Os11g17090
OsAffx.18892.1.S1_at--1014--7611Chr11:9458944..9458968 (25 bp)
GGGAAGCTCCCTTTGCGCGAGAATC
LOC_Os11g17090
OsAffx.18892.1.S1_at--626--8491Chr11:9458889..9458913 (25 bp)
TGGAGCCTTGGTCTACCCGAAAAAG
LOC_Os11g17090
OsAffx.18892.1.S1_at--549--3851Chr11:9458784..9458808 (25 bp)
CTGAAGATCCTTCCGATGCCGATGA
LOC_Os11g17090
OsAffx.18892.1.S1_at--1030--1851Chr11:9458709..9458733 (25 bp)
ACGACTACCTAGGTGAGGACGCCAT
LOC_Os11g17090
OsAffx.18892.1.S1_at--1148--831Chr11:9458686..9458710 (25 bp)
ATGGACACTAATGCCACTGCTTGCT
LOC_Os11g17090
OsAffx.18892.1.S1_at--899--10711Chr11:9458666..9458690 (25 bp)
TTGCTTCGCCACAAGTGAATCCCTA
LOC_Os11g17090
OsAffx.18892.1.S1_at--734--8991NONE
TGAATCCCTAGCAGGCATCTACGGA
NONE
OsAffx.18892.1.S1_at--1122--9411Chr11:9457658..9457682 (25 bp)
TCGTGCTCTCTGTTCTCAAGGCGAA
LOC_Os11g17090
OsAffx.18892.1.S1_at--627--2571Chr11:9457635..9457659 (25 bp)
AACGGTTGCGAGCATGTGACCGCCT
LOC_Os11g17090
Target Sequence 
TTGTCGATTCAGCTACCGGGATTTGGTGGAGTTTTGCATGCTGAGGGCGAAGTTGAGGGGGAGGCAAAGAAGTTGATTGG
GGATATGATCCCCAAGGAGTACGGGATCATGGTTGTTCGACAAACCGAGGGACGGACGAACGGCCTCTTCGTCGGGAAGC
TCCCTTTGCGCGAGAATCCCACCAAGGAGGTCGTGCTTGGCGATGACGTGGAGCCTTGGTCTACCCGAAAAAGGAAGCTA
GCGGTGGCCATGGCCTCGGCGTCGGGTAGAGCGAAGGTGGCTCGTCCAGCGAAGGCCGCCACACTTGCCCCTTCTGAAGA
TCCTTCCGATGCCGATGACGCCGAGGACGTTGAGGTGGAGTCAGAAGCAGAAGCAGACGATCAGGGTGACGACTACCTAG
GTGAGGACGCCATGGACACTAATGCCACTGCTTGCTTCGCCACAAGTGAATCCCTAGCAGGCATCTACGGAGAAGGGTGC
TCTCGGGTGGTGGCAGGGTTCGTGCTCTCTGTTCTCAAGGCGAACGGTTGCGAGCATGTGACCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis