Browse Element(s) Details


Os.52745.1.S1_at

Description gb:AK069029.1
DB_XREF= gi:32979053
TID=Os.52745.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003E06, full insert sequence.
FL= gb:AK069029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4465411/11Cytochrome P450 86A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein
LOC_Os02g44630Os.37752.1.S1_at10/112+27038450..27041579Aquaporin RWC3, putative, expressed
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed
LOC_Os02g44654Os.52745.1.S1_at11/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44654Os.8021.1.S1_x_at1/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0008393molecular_functionfatty acid (omega-1)-hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52745.1.S1_at--1118--9331Chr02:27057757..27057781 (25 bp)
TCGCGCAGGGACACCGAGTCGAGCA
LOC_Os02g44654
Os.52745.1.S1_at--1086--9551Chr02:27057715..27057739 (25 bp)
TCTTCATGAAGAACGGGCTCCGAAT
LOC_Os02g44654
Os.52745.1.S1_at--234--5291Chr02:27057694..27057718 (25 bp)
GAATGGAGGTACGTCCACGCGACCT
LOC_Os02g44654
Os.52745.1.S1_at--86--611Chr02:27057618..27057642 (25 bp)
ATGCGCGTAGAAGATCCGAGGGCCC
LOC_Os02g44654
Os.52745.1.S1_at--906--3851Chr02:27057573..27057597 (25 bp)
CTGATGGAGGCATGGAACATTCAAT
LOC_Os02g44654
Os.52745.1.S1_at--834--10551Chr02:27057480..27057504 (25 bp)
TTCTTCTCTGAATTTACCATCCGGA
LOC_Os02g44654
Os.52745.1.S1_at--429--10431Chr02:27057467..27057491 (25 bp)
TTACCATCCGGATCAGAGAAACTTG
LOC_Os02g44654
Os.52745.1.S1_at--625--5131Chr02:27057427..27057451 (25 bp)
GCAAAGACGAGATCTACTTGGATTT
LOC_Os02g44654
Os.52745.1.S1_at--594--2071Chr02:27057412..27057436 (25 bp)
ACTTGGATTTGGATCTGAGAGAGCA
LOC_Os02g44654
Os.52745.1.S1_at--878--1211Chr02:27057299..27057323 (25 bp)
AGTTAGTTTGTGTTGGTGACCAGCC
LOC_Os02g44654
Os.52745.1.S1_at--17--7771Chr02:27057285..27057309 (25 bp)
GGTGACCAGCCAACTATTATATTTA
LOC_Os02g44654
Target Sequence 
TCGCGCAGGGACACCGAGTCGAGCAGANGATGTCCCTCACGCTCTTCATGAAGAACGGGCTCCGAATGGAGGTACGTCCA
CGCGACCTCGCGCCCGTCGCCGACGAGCTCCGCGGCGCGGACGTGAGGGCCACCGNACCATGCGCGTAGAAGATCCGAGG
GCCCCGCTCGCGCCAAGATTCGTGCTGATGGAGGCATGGAACATTCAATGNTGTAGATAANAGAGAGAGTACGAGACAGT
AAGTAAATTAAATGGGNTTTGGNTGGNGAACATTTANAGCCGCTTCTTCTCTGAATTTACCATCCGGATCAGAGAAACTT
GGATTTTNNTTTTTTTTTGCAAAGACGAGATCTACTTGGATTTGGATCTGAGAGAGCAGAAGCGGAGAAGCAAAAAAGAN
AANTAAAGAAAGAGCAATAATTTGTGATGTAGCTAAGATGCAGAGTACTTTGATAGTATTTGTTCGAGTTAGTTTGTGTT
GGTGACCAGCCAACTATTATATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis