Browse Element(s) Details


Os.37752.1.S1_at

Description gb:AF022737.1
DB_XREF= gi:2570508
TID=Os.37752.1
CNT=464
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.37752 (NCBI UniGene Cluster)
DEF=Oryza sativa transmembrane protein mRNA, complete cds.
PROD=transmembrane protein
FL= gb:AB009665.1 gb:AF022737.1 gb:AK061769.1 gb:AK103807.1 gb:AJ224327.1 gb:AK104658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4463010/11Aquaporin RWC3, putative, expressed
LOC_Os11g242901/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein
LOC_Os02g44630Os.37752.1.S1_at10/112+27038450..27041579Aquaporin RWC3, putative, expressed
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed
LOC_Os02g44654Os.52745.1.S1_at11/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44654Os.8021.1.S1_x_at1/112+27057262..27059364Cytochrome P450 86A2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009651biological_processresponse to salt stress
GO:0019748biological_processsecondary metabolism
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0015250molecular_functionwater channel activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37752.1.S1_at--378--8491Chr02:27040092..27040116 (25 bp)
TGGCTACACCAAGGGTGACGGTCTT
LOC_Os02g44630
Os.37752.1.S1_at--252--8951Chr02:27040107..27040131 (25 bp)
TGACGGTCTTGGTGCTGAGATTGTT
LOC_Os02g44630
Os.37752.1.S1_at--557--6051Chr02:27040123..27040147 (25 bp)
GAGATTGTTGGCACCTTCATCCTGG
LOC_Os02g44630
Os.37752.1.S1_at--298--7151Chr02:27040156..27040180 (25 bp)
GTCTTCTCAGCCACTGATGCCAAGA
LOC_Os02g44630
Os.37752.1.S1_at--939--931Chr02:27040180..27040204 (25 bp)
AGGAATGCCAGGGACTCACATGTTC
LOC_Os02g44630
Os.37752.1.S1_at--710--1071Chr02:27040189..27040572 (25 bp)
AGGGACTCACATGTTCCTATCCTTG
LOC_Os02g44630
Os.37752.1.S1_at--1072--9191Chr02:27040579..27040603 (25 bp)
TGCCAATTGGTTTTGCGGTGTTCCT
LOC_Os02g44630
Os.37752.1.S1_at--511--5191Chr02:27041327..27041351 (25 bp)
GCAATCGTGATGTCCTGTTTCCCGC
LOC_Os02g44630
Os.37752.1.S1_at--549--4851Chr02:27041354..27041378 (25 bp)
GCTACTGCTGCGCATCTGTCGATTC
LOC_Os02g44630
Os.37752.1.S1_at--1128--8712Chr08:17350374..17350791 (25 bp)
TGTCGATTCCCTCCTATCTCTAGTC
NONE
Os.37752.1.S1_at--591--4351Chr02:27041442..27041466 (25 bp)
CCAGTACTCAGTCACTGTATGTTTT
LOC_Os02g44630
Target Sequence 
TGGCTACACCAAGGGTGACGGTCTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTG
ATGCCAAGAGGAATGCCAGGGACTCACATGTTCCTATCCTTGCCCCACTGCCAATTGGTTTTGCGGTGTTCCTGGTCCAC
CTGGCCACCATCCCCNATCACCGGTACTGGCATCAACCCAGCCAGGAGCCTTGGCGCTGCCATCATCTACAACAAGGACC
ATGCCTGGAATGACCATTGGATCTTCTGGGTTGGTCCCTTCGTTGGCGCTGCCCTGGCTGCCATCTACCACCAGGTGATC
ATCAGGGCGATCCCATTCAAGAGCAGGTCTTAAGCCCCGCGCCGCCGCTGCGCAGCCGACGACATGCAACGCAATCGTGA
TGTCCTGTTTCCCGCGCGCTACTGCTGCGCATCTGTCGATTCCCTCCTATCTCTAGTCCCCAAGANTGTTTTTCCTATNT
GAACCCTGAACAACTCAATCGTGTAATCCAGTACTCAGTCACTGTATGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis